YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85675394, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85675394, gi|....

Description	E-value	Query Range	Subject Range
gi\|71155563, gi\|... - gi\|71368737\|ref\|ZP_00659224.1\| Arsenical-resistance protein ACR3 [Nocardioides sp. JS614], gi\|711555...	215.0	[0..4]	[328..243]
gi\|83721040, gi\|... - gi\|83721040\|ref\|YP_440860.1\| sodium/bile acid symporter family protein [Burkholderia thailandensis E...	198.0	[0..2]	[332..49]
gi\|50730661 - gi\|50730661\|ref\|XP_425589.1\| PREDICTED: similar to Ileal sodium/bile acid cotransporter (Ileal Na(+)...	198.0	[0..33]	[331..43]
gi\|148568161, gi... - gi\|148656051\|ref\|YP_001276256.1\| arsenical-resistance protein [Roseiflexus sp. RS-1], gi\|148568161\|g...	195.0	[0..4]	[328..24]
gi\|69150806, gi\|... - gi\|69938056\|ref\|ZP_00632607.1\| Bile acid:sodium symporter [Paracoccus denitrificans PD1222], gi\|6915...	194.0	[0..2]	[317..238]
gi\|76580390, gi\|... - gi\|76810937\|ref\|YP_331946.1\| sodium/bile acid symporter family protein [Burkholderia pseudomallei 17...	193.0	[0..2]	[332..39]
gi\|187733229, gi... - gi\|75177820\|ref\|ZP_00697882.1\| COG0385: Predicted Na+-dependent transporter [Shigella boydii BS512],... gi\|82544869, gi\|... - gi\|82544869\|ref\|YP_408816.1\| putative cytochrome oxidase [Shigella boydii Sb227], gi\|81246280\|gb\|ABB...	192.0	[0..1]	[332..1]
gi\|13362752, gi\|... - gi\|15832536\|ref\|NP_311309.1\| putative cytochrome oxidase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|110642593, gi... - gi\|110642593\|ref\|YP_670323.1\| hypothetical protein ECP_2433 [Escherichia coli 536], gi\|110344185\|gb\|... gi\|189354247, gi... - gi\|189354247\|gb\|EDU72666.1\| transporter, bile acid/Na+ symporter family [Escherichia coli O157:H7 st... gi\|91211746, gi\|... - gi\|91211746\|ref\|YP_541732.1\| putative cytochrome oxidase [Escherichia coli UTI89], gi\|91073320\|gb\|AB... gi\|227887455, gi... - gi\|227887455\|ref\|ZP_04005260.1\| bile acid/Na+ symporter family transporter [Escherichia coli 83972],... gi\|226901298, gi... - gi\|237704932\|ref\|ZP_04535413.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254593763, gi... - gi\|254794363\|ref\|YP_003079200.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|25497914, gi\|... - pir\|\|D85883 probable cytochrome oxidase yfeH [imported] - Escherichia coli (strain O157:H7, substrai... gi\|218428111, gi... - gi\|218690547\|ref\|YP_002398759.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia... gi\|218366126, gi... - gi\|218559357\|ref\|YP_002392270.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia... gi\|13362752, gi\|... - gi\|15832536\|ref\|NP_311309.1\| putative cytochrome oxidase [Escherichia coli O157:H7], gi\|13362752\|dbj... gi\|26248785, gi\|... - gi\|26248785\|ref\|NP_754825.1\| hypothetical protein c2943 [Escherichia coli CFT073], gi\|26109191\|gb\|AA... gi\|117624618, gi... - gi\|117624618\|ref\|YP_853531.1\| putative cytochrome oxidase [Escherichia coli APEC O1], gi\|115513742\|g... gi\|74312945, gi\|... - gi\|74312945\|ref\|YP_311364.1\| putative cytochrome oxidase [Shigella sonnei Ss046], gi\|73856422\|gb\|AAZ... gi\|15802942, gi\|... - gi\|15802942\|ref\|NP_288971.1\| putative cytochrome oxidase [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|191174594, gi... - gi\|75235883\|ref\|ZP_00720028.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli F11], ... gi\|195938755 - gi\|195938755\|ref\|ZP_03084137.1\| putative cytochrome oxidase [Escherichia coli O157:H7 str. EC4024] gi\|168790575, gi... - gi\|189369989\|gb\|EDU88405.1\| transporter, bile acid/Na+ symporter family [Escherichia coli O157:H7 st... gi\|208818912, gi... - gi\|208818912\|ref\|ZP_03259232.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ... gi\|208813109, gi... - gi\|208813109\|ref\|ZP_03254438.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ... gi\|215265736, gi... - gi\|215487664\|ref\|YP_002330095.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|209159093, gi... - gi\|209397693\|ref\|YP_002271888.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7... gi\|218554942, gi... - gi\|218554942\|ref\|YP_002387855.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia... gi\|217319409, gi... - gi\|217327042\|ref\|ZP_03443125.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ...	191.0	[0..1]	[332..1]
gi\|193066726, gi... - gi\|75255080\|ref\|ZP_00726980.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli E22], ...	191.0	[0..1]	[332..1]
gi\|209913150, gi... - gi\|209919891\|ref\|YP_002293975.1\| putative cytochrome oxidase [Escherichia coli SE11], gi\|209913150\|d... gi\|157157547, gi... - gi\|75187163\|ref\|ZP_00700430.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli E24377... gi\|218352777, gi... - gi\|218696045\|ref\|YP_002403712.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia...	190.0	[0..1]	[332..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFRILDPF TLTLITVVLL ASFFPARGDF VPFFENLTTA AIALLFFMHG AKLSREAIIA  60
   61 GGGHWRLHLW VMCSTFVLFP ILGVLFAWWK PVNVDPMLYS GFLYLCILPA TVQSAIAFTS 120
  121 MAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNVAAAVCSA SASSLLGIFL SPLLVGLVMN VHGAGGSLEQ VGKIMLQLLL PFVLGHLSRP  60
   61 WIGDWVSRNK KWIAKTDQTS ILLVVYTAFS EAVVNGIWHK VGWGSLLFIV VVSCVLLAIV 120
  121 IVVNVFMARR LSFNKADEIT IVFCGSKKSL ANGIPMANIL FPTSVIGMMV LPLMIFHQIQ 180
  181 LMVCAVLARR YKRQTEQLQA QQESSADKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits