YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|193067728, gi...
Organism:	Escherichia coli E110019
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|193067728, gi....

Description	E-value	Query Range	Subject Range
SFSA_SHELP - Sugar fermentation stimulation protein homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) G...	394.0	[0..1]	[234..1]
SFSA_SHESM - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain MR-4) GN=sfsA PE=3 SV=1	392.0	[0..1]	[234..1]
SFSA_SHESR - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain MR-7) GN=sfsA PE=3 SV=1	392.0	[0..1]	[234..1]
SFSA_SHEB5 - Sugar fermentation stimulation protein homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) ...	388.0	[0..1]	[234..1]
SFSA_SHEB9 - Sugar fermentation stimulation protein homolog OS=Shewanella baltica (strain OS195) GN=sfsA PE=3 SV=...	388.0	[0..1]	[234..1]
SFSA_SHIF8 - Sugar fermentation stimulation protein A OS=Shigella flexneri serotype 5b (strain 8401) GN=sfsA PE=3...	387.0	[0..1]	[234..1]
gi\|30061706, gi\|... - gi\|30061706\|ref\|NP_835877.1\| sugar fermentation stimulation protein A [Shigella flexneri 2a str. 245... gi\|24111584, gi\|... - gi\|24111584\|ref\|NP_706094.1\| sugar fermentation stimulation protein A [Shigella flexneri 2a str. 301... SFSA_SHIFL - Sugar fermentation stimulation protein A OS=Shigella flexneri GN=sfsA PE=3 SV=1	386.0	[0..1]	[234..1]
SFSA_PSEA6 - Sugar fermentation stimulation protein homolog OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA...	384.0	[0..1]	[234..1]
gi\|251783706, gi... - gi\|251783706\|ref\|YP_002998010.1\| hypothetical protein B21_00144 [Escherichia coli BL21], gi\|24237597... gi\|253972167, gi... - gi\|254160266\|ref\|YP_003043374.1\| sugar fermentation stimulation protein A [Escherichia coli B str. R... gi\|254287069, gi... - gi\|254287069\|ref\|YP_003052817.1\| sugar fermentation stimulation protein A [Escherichia coli BL21(DE3... gi\|194421926, gi... - gi\|83585463\|ref\|ZP_00924108.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric...	384.0	[0..1]	[234..1]
SFSA_SHEFN - Sugar fermentation stimulation protein homolog OS=Shewanella frigidimarina (strain NCIMB 400) GN=sfs...	384.0	[0..1]	[234..1]

Back

Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSPPLQRA TLIQRYKRFL ADVITPDGRE LTLHCPNTGA MTGCATPGDT VWYSTSDNTK  60
   61 RKYPHTWELT QSQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAFICVNTLW ANRLTKEAIL NESISELSGY SSLKSEVKYG AERSRIDFML QADSRPDCYI  60
   61 EVKSVTLAEN EQGYFPDAVT ERGQKHLREL MSVAAEGQRA VIFFAVLHSA ITRFSPARHI 120
  121 DEKYAQLLSE AQQRGVEILA YKAEISAEGM ALKKSLPVTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits