YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|191165097, gi...
Organism:	Escherichia coli B7A
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|191165097, gi....

Description	E-value	Query Range	Subject Range
gi\|81245480, gi\|... - gi\|82544069\|ref\|YP_408016.1\| hypothetical protein SBO_1576 [Shigella boydii Sb227], gi\|81245480\|gb\|A... gi\|226900218, gi... - gi\|237705461\|ref\|ZP_04535942.1\| biofilm-dependent modulation protein [Escherichia sp. 3_2_53FAA], gi... gi\|117623717, gi... - gi\|117623717\|ref\|YP_852630.1\| biofilm-dependent modulation protein [Escherichia coli APEC O1], gi\|11... gi\|209770648, gi... - gi\|25497833\|pir\|\|D85728 hypothetical protein Z2229 [imported] - Escherichia coli (strain O157:H7, s... gi\|26108173, gi\|... - gi\|26247771\|ref\|NP_753811.1\| Bdm protein [Escherichia coli CFT073], gi\|26108173\|gb\|AAN80373.1\|AE0167... gi\|13361551 - gi\|13361551\|dbj\|BAB35508.1\| hypothetical protein [Escherichia coli O157:H7] gi\|12515200, gi\|... - gi\|15801656\|ref\|NP_287674.1\| hypothetical protein Z2229 [Escherichia coli O157:H7 EDL933], gi\|125152... gi\|13361551 - gi\|13361551\|dbj\|BAB35508.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|91210722, gi\|... - gi\|91210722\|ref\|YP_540708.1\| hypothetical protein UTI89_C1699 [Escherichia coli UTI89], gi\|91072296\|...	135.0	[0..1]	[71..22]
gi\|7466180 - gi\|7466180\|pir\|\|D64901 hypothetical protein b1481 - Escherichia coli (strain K-12) gi\|49176116, gi\|... - gi\|49176116\|ref\|NP_415998.3\| biofilm-dependent modulation protein [Escherichia coli K12], gb\|AAC7455...	134.0	[0..1]	[71..22]
gi\|242377233, gi... - gi\|251784960\|ref\|YP_002999264.1\| hypothetical protein B21_01451 [Escherichia coli BL21], gi\|24237723... gi\|253773548, gi... - gi\|254288344\|ref\|YP_003054092.1\| biofilm-dependent modulation protein [Escherichia coli BL21(DE3)], ... gi\|254161539, gi... - gi\|254161539\|ref\|YP_003044647.1\| biofilm-dependent modulation protein [Escherichia coli B str. REL60... EG14301 - biofilm-dependent modulation protein / Osmoresponsive gene with reduced expression in biofilms; func... BDM_ECOLI - Protein bdm (Biofilm-dependent modulation protein) - Escherichia coli gi\|170081152, gi... - gi\|170081152\|ref\|YP_001730472.1\| biofilm-dependent modulation protein [Escherichia coli str. K-12 su... gi\|83587819, gi\|... - gi\|83587819\|ref\|ZP_00926445.1\| hypothetical protein Ecol1_01000847 [Escherichia coli 101-1], gi\|1944... gi\|157066637, gi... - gi\|75195582\|ref\|ZP_00705652.1\| hypothetical protein EcolH_01001377 [Escherichia coli HS], gi\|1571609... gi\|188492242, gi... - gi\|75512567\|ref\|ZP_00735090.1\| hypothetical protein Ecol5_01003304 [Escherichia coli 53638], gi\|1884... gi\|85674986, gi\|... - gi\|89108324\|ref\|AP_002104.1\| biofilm-dependent modulation protein [Escherichia coli str. K-12 substr... gi\|238900703, gi... - gi\|238900703\|ref\|YP_002926499.1\| biofilm-dependent modulation protein [Escherichia coli BW2952], gi\|... EG14301 - biofilm-dependent modulation protein / Osmoresponsive gene with reduced expression in biofilms; func...	130.0	[0..1]	[71..1]
gi\|194419795, gi... - gi\|83570863\|ref\|ZP_00922305.1\| hypothetical protein Sdys1_01000691 [Shigella dysenteriae 1012], gi\|1...	129.0	[0..1]	[71..1]
BDM_SALTY - Protein bdm homolog OS=Salmonella typhimurium GN=bdm PE=4 SV=1 gi\|56127746, gi\|... - gi\|56413489\|ref\|YP_150564.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yddX] [protein=biofilm-dependent modulation protein] [protein_id=YP_005237454.1] [location=165... gi\|161613996, gi... - gi\|161613996\|ref\|YP_001587961.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|160864680, gi... - gi\|161503333\|ref\|YP_001570445.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ar... gi\|205328943, gi... - gi\|205328943\|gb\|EDZ15707.1\| protein bdm [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- st... gi\|205324991, gi... - gi\|205324991\|gb\|EDZ12830.1\| protein bdm [Salmonella enterica subsp. enterica serovar Saintpaul str. ... BDM_SALTI - Protein bdm homolog OS=Salmonella typhi GN=bdm PE=4 SV=1 gi\|16760309 - gi\|16760309\|ref\|NP_455926.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... gi\|238911799 - gi\|238911799\|ref\|ZP_04655636.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... BDM_SALTY - Protein bdm homolog OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bdm PE=4 SV=1 gi\|29141926, gi\|... - gi\|29141926\|ref\|NP_805268.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... gi\|197937596, gi... - gi\|198243080\|ref\|YP_002215582.1\| protein bdm [Salmonella enterica subsp. enterica serovar Dublin str... gi\|197362414, gi... - gi\|197362414\|ref\|YP_002142051.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|204322956, gi... - gi\|204927614\|ref\|ZP_03218815.1\| protein bdm [Salmonella enterica subsp. enterica serovar Javiana str... gi\|199602312, gi... - gi\|200389867\|ref\|ZP_03216478.1\| protein bdm [Salmonella enterica subsp. enterica serovar Virchow str... gi\|194711447, gi... - gi\|194735945\|ref\|YP_002114589.1\| protein bdm [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|194457436, gi... - gi\|194471072\|ref\|ZP_03077056.1\| protein bdm [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|197243348, gi... - gi\|197265093\|ref\|ZP_03165167.1\| protein bdm [Salmonella enterica subsp. enterica serovar Saintpaul s... gi\|197211309, gi... - gi\|197247606\|ref\|YP_002146473.1\| protein bdm [Salmonella enterica subsp. enterica serovar Agona str.... gi\|168819333, gi... - gi\|205343818\|gb\|EDZ30582.1\| protein bdm [Salmonella enterica subsp. enterica serovar Weltevreden str... gi\|195634355, gi... - gi\|195634355\|gb\|EDX52707.1\| protein bdm [Salmonella enterica subsp. enterica serovar Newport str. SL... gi\|194408303, gi... - gi\|194449999\|ref\|YP_002045605.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|194404139, gi... - gi\|194445476\|ref\|YP_002040812.1\| protein bdm [Salmonella enterica subsp. enterica serovar Newport st... gi\|168235668, gi... - gi\|197291139\|gb\|EDY30492.1\| protein bdm [Salmonella enterica subsp. enterica serovar Schwarzengrund ... gi\|205335498, gi... - gi\|205335498\|gb\|EDZ22262.1\| protein bdm [Salmonella enterica subsp. enterica serovar Kentucky str. C... BDM_SALTY - Protein bdm homolog OS=Salmonella typhimurium GN=bdm PE=4 SV=1 gi\|168260259, gi... - gi\|205350962\|gb\|EDZ37593.1\| protein bdm [Salmonella enterica subsp. enterica serovar Hadar str. RI_0... BDM_SALTI - Protein bdm homolog OS=Salmonella typhi GN=bdm PE=4 SV=1 gi\|205339294, gi... - gi\|205339294\|gb\|EDZ26058.1\| protein bdm [Salmonella enterica subsp. enterica serovar Heidelberg str.... gi\|213980180 - gi\|213980180\|ref\|ZP_03407439.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213850346 - gi\|213850346\|ref\|ZP_03381244.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|224583942, gi... - gi\|224583942\|ref\|YP_002637740.1\| hypothetical protein SPC_2174 [Salmonella enterica subsp. enterica ... gi\|62127768, gi\|... - gi\|62180135\|ref\|YP_216552.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. enteri... gi\|214001410 - gi\|214001410\|ref\|ZP_03412145.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213580043 - gi\|213580043\|ref\|ZP_03361869.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213426465 - gi\|213426465\|ref\|ZP_03359215.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213649197 - gi\|213649197\|ref\|ZP_03379250.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213615610 - gi\|213615610\|ref\|ZP_03371436.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|207856941, gi... - gi\|207856941\|ref\|YP_002243592.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|205272531, gi... - gi\|205352750\|ref\|YP_002226551.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. en... gi\|213417482 - gi\|213417482\|ref\|ZP_03350624.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent... gi\|213052167 - gi\|213052167\|ref\|ZP_03345045.1\| biofilm-dependent modulation protein [Salmonella enterica subsp. ent...	128.0	[0..1]	[71..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTYYQAENS TAEPALVNAI EQGLRAEHGV VTEDDILMEL TKWVEASDND ILSDIYQQTI  60
   61 NYVVSGQHPT L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits