YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89108822, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89108822, gi|....

Description	E-value	Query Range	Subject Range
gi\|26110824, gi\|... - gi\|26250394\|ref\|NP_756434.1\| hypothetical protein c4574 [Escherichia coli CFT073], gi\|26110824\|gb\|AA... gi\|253974786, gi... - gi\|254162885\|ref\|YP_003045993.1\| hypothetical protein ECB_02806 [Escherichia coli B str. REL606], gi...	147.0	[0..1]	[73..1]
gi\|170521888, gi... - gi\|170684170\|ref\|YP_001745193.1\| hypothetical protein EcSMS35_3210 [Escherichia coli SMS-3-5], gi\|17... gi\|13236681 - gi\|13236681\|gb\|AAK16199.1\| YeeT [Escherichia coli]	146.0	[0..1]	[73..1]
gi\|75212394, gi\|... - gi\|75212394\|ref\|ZP_00712418.1\| hypothetical protein EcolB_01000478 [Escherichia coli B171], gi\|75212... gi\|195183363, gi... - gi\|195183363\|dbj\|BAG66900.1\| predicted protein [Escherichia coli O111:H-], gi\|195183283\|dbj\|BAG66822... gi\|75229699, gi\|... - gi\|75229699\|ref\|ZP_00716232.1\| hypothetical protein EcolB7_01002071 [Escherichia coli B7A], gi\|19116... gi\|75189024, gi\|... - gi\|75189024\|ref\|ZP_00702291.1\| hypothetical protein EcolE_01002302 [Escherichia coli E24377A], gi\|15... gi\|218435044, gi... - gi\|218707947\|ref\|YP_002415466.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli U... gi\|192931327, gi... - gi\|75259060\|ref\|ZP_00730428.1\| hypothetical protein EcolE2_01001324 [Escherichia coli E22], gi\|19306... gi\|82779593, gi\|... - gi\|82779593\|ref\|YP_405942.1\| hypothetical protein SDY_4591 [Shigella dysenteriae Sd197], gi\|81243741... gi\|254692434 - gi\|254692434\|emb\|CAR48077.1\| hypothetical protein [Escherichia coli]	146.0	[0..1]	[73..1]
gi\|28316259 - gi\|28316259\|emb\|CAD66204.1\| hypothetical protein [Escherichia coli] gi\|110342133, gi... - gi\|110640541\|ref\|YP_668269.1\| hypothetical protein ECP_0336 [Escherichia coli 536], gi\|110342133\|gb\|... gi\|190908460, gi... - gi\|75241921\|ref\|ZP_00725740.1\| hypothetical protein EcolF_01001286 [Escherichia coli F11], gi\|191171...	146.0	[0..1]	[73..1]
gi\|218372473, gi... - gi\|218702487\|ref\|YP_002410116.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli I... gi\|23954300 - gi\|23954300\|emb\|CAD42099.1\| hypothetical protein [Escherichia coli] gi\|24114261, gi\|... - gi\|24114261\|ref\|NP_708771.1\| hypothetical protein SF2997 [Shigella flexneri 2a str. 301], gi\|2405341... gi\|30064314, gi\|... - gi\|30064314\|ref\|NP_838485.1\| hypothetical protein S3202 [Shigella flexneri 2a str. 2457T], gi\|300425... gi\|91075517, gi\|... - gi\|91213943\|ref\|YP_543929.1\| hypothetical protein UTI89_C4995 [Escherichia coli UTI89], gi\|91075517\|... gi\|110346331, gi... - gi\|110644739\|ref\|YP_672469.1\| hypothetical protein ECP_4632 [Escherichia coli 536], gi\|110346331\|gb\|... gi\|190909037, gi... - gi\|75242262\|ref\|ZP_00726024.1\| hypothetical protein EcolF_01000717 [Escherichia coli F11], gi\|191170... gi\|170518463, gi... - gi\|170680745\|ref\|YP_001746719.1\| hypothetical protein EcSMS35_4805 [Escherichia coli SMS-3-5], gi\|17... gi\|75187725, gi\|... - gi\|75187725\|ref\|ZP_00700992.1\| hypothetical protein EcolE_01000962 [Escherichia coli E24377A], gi\|15... gi\|218430098, gi... - gi\|218692534\|ref\|YP_002400746.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli E... gi\|218354815, gi... - gi\|218698083\|ref\|YP_002405750.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli 5... gi\|227837808, gi... - gi\|227885219\|ref\|ZP_04003024.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783780...	145.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIITRGEAM RIHQQHPTSR LFPFCTGKYR WHGSAEAYTG REVQDIPGVL AVFAERRKDS  60
   61 FGPYVRLMSV TLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.337242
Match:	PF06174.2
Description:	No description for PF06174.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits