| Protein: | gi|61363275, gi|... |
| Organism: | synthetic construct |
| Length: | 218 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61363275, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-56 | [1..218] | [1..218] |
|
|
3.0E-53 | [1..218] | [1..218] |
|
|
8.0E-52 | [1..218] | [1..218] |
|
|
1.0E-51 | [1..218] | [1..218] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MSCSGSGADP EAAPASAASA PGPAPPVSAP AALPSSTAAE NKASPAGTAG GPGAGAAAGG 60
61 TGPLAARAGE PAERRGAAPV SAGGAAPPEG AISNGVYVLP SAANGDVKPV VSS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.524 | 0.919 | RNA polymerase II transcription factor activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.365 | 0.003 | perinuclear region of cytoplasm | a.158.1 | F-box domain |
| View | Download | 0.328 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.260 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.237 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [114-218] |
1 11 21 31 41 51
| | | | | |
1 TPLVDFLMQL EDYTPTIPDA VTGYYLNRAG FEASDPRIIR LISLAAQKFI SDIANDALQH 60
61 CKMKGTASGS SRSKSKDRKY TLTMEDLTPA LSEYGINVKK PHYFT
|
| Detection Method: | |
| Confidence: | 39.327902 |
| Match: | PF03540.4 |
| Description: | No description for PF03540.4 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.622 | 0.959 | transcription factor TFIID complex | a.22.1 | Histone-fold |
| View | Download | 0.609 | 0.018 | perinuclear region of cytoplasm | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.462 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.457 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.438 | N/A | N/A | a.22.1 | Histone-fold |
