YRC Public Data Repository - Protein Structure Prediction

Protein:	RT24_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT24_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32405264, gi\|... - gi\|7899415\|emb\|CAB91705.1\| conserved hypothetical protein [Neurospora crassa], gi\|32405264\|ref\|XP_32... gi\|85085763 - gi\|85085763\|ref\|XP_957565.1\| hypothetical protein ( hypothetical protein B23L21.370 [imported] - Neu...	270.0	[0..61]	[250..141]
gi\|38111318, gi\|... - gi\|39971911\|ref\|XP_367346.1\| hypothetical protein MGG_07271 [Magnaporthe grisea 70-15], gb\|EAA56916....	264.0	[0..61]	[251..153]
gi\|46136885, gi\|... - gi\|46136885\|ref\|XP_390134.1\| hypothetical protein FG09958.1 [Gibberella zeae PH-1], gi\|42544853\|gb\|E...	252.0	[0..41]	[254..133]
gi\|71023615, gi\|... - gi\|71023615\|ref\|XP_762037.1\| hypothetical protein UM05890.1 [Ustilago maydis 521], ref\|XP_403505.1\| ...	248.0	[0..29]	[225..31]
gi\|88177170, gi\|... - gi\|88177170\|gb\|EAQ84638.1\| hypothetical protein CHGG_08652 [Chaetomium globosum CBS 148.51], gi\|1162...	244.0	[0..56]	[255..142]
gi\|45200957, gi\|... - gi\|45200957\|ref\|NP_986527.1\| AGL140Cp [Ashbya gossypii ATCC 10895], gi\|44985727\|gb\|AAS54351.1\| AGL14... gi\|44985727 - gi\|44985727\|gb\|AAS54351.1\| AGL140Cp [Ashbya gossypii ATCC 10895]	239.0	[0..60]	[246..114]
gi\|49088562, gi\|... - gi\|67522995\|ref\|XP_659558.1\| hypothetical protein AN1954.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	237.0	[0..53]	[253..137]
gi\|207346629 - gi\|207346629\|gb\|EDZ73072.1\| YDR175Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404870 - gi\|190404870\|gb\|EDV08137.1\| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae... RSM24 - Mitochondrial ribosomal protein of the small subunit RT24_YEAST - 37S ribosomal protein S24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	235.0	[0..67]	[247..135]
gi\|70993286, gi\|... - gi\|70993286\|ref\|XP_751490.1\| 37S ribosomal protein Rsm24 [Aspergillus fumigatus Af293], gi\|66849124\|... gi\|159125576 - gi\|159125576\|gb\|EDP50693.1\| 37S ribosomal protein Rsm24, putative [Aspergillus fumigatus A1163]	214.0	[0..71]	[257..157]
gi\|115389792, gi... - gi\|115389792\|ref\|XP_001212401.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	211.0	[0..43]	[251..127]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNPLLSLL KADAIFLGQL SKSSFCATSR AFSVFYFTRF KRSAYVSAPF GIEPHDEKEL  60
   61 KTIDDNVHSN NLSWQKIQEH EVIRELYRKA AYELPGLTPY TQSFKKPAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQIFRFESDV QMSSFEKMNP KVVVTFKVTN IPLLEEKQRH VLRLLVGPRY NPEEDLVRIS  60
   61 SDKYSSALQN KYHLIKILTS LIEESKRNAE KFSHVPLNTG HWKYKKCDKR MPQEWLADAT 120
  121 TLTSKKKTTI GKQSHNTVLE RESIATTDE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	1j26A
Description:	Solution structure of a putative peptidyl-tRNA hydrolase domain in a mouse hypothetical protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits