YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165980, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165980, gi|....

Description	E-value	Query Range	Subject Range
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	296.0	[0..2]	[204..3]
gi\|227177082, gi... - gi\|227553829\|ref\|ZP_03983878.1\| Mn superoxide dismutase [Enterococcus faecalis HH22], gi\|227177082\|g... SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=sodA PE=3 SV=1 SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1	295.0	[0..2]	[202..3]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	295.0	[0..2]	[204..3]
gi\|57019938, gi\|... - gi\|57168657\|ref\|ZP_00367789.1\| superoxide dismutase (fe) [Campylobacter coli RM2228], gi\|57019938\|gb...	292.0	[0..1]	[220..1]
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1	291.0	[0..2]	[202..3]
gi\|35211244, gi\|... - gi\|37520251\|ref\|NP_923628.1\| superoxide dismutase [Gloeobacter violaceus PCC 7421], gi\|35211244\|dbj\|...	291.0	[0..2]	[201..113]
SODF_PSEAE - Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3 gi\|194549956, gi... - gi\|84316924\|ref\|ZP_00965382.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa C3719], gi\|2542... SODF_PSEAE - Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|194555809, gi... - gi\|84323103\|ref\|ZP_00971180.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa 2192], gi\|25424... gi\|218773685, gi... - gi\|218893457\|ref\|YP_002442326.1\| superoxide dismutase [Pseudomonas aeruginosa LESB58], gi\|218773685\|... gi\|116052400, gi... - gi\|32039580\|ref\|ZP_00137852.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa UCBPP-PA14], gi... gi\|107100050 - gi\|107100050\|ref\|ZP_01363968.1\| hypothetical protein PaerPA_01001071 [Pseudomonas aeruginosa PACS2]	291.0	[0..2]	[200..3]
gi\|3320377 - gi\|3320377\|gb\|AAC26483.1\| manganese superoxide dismutase [Vibrio alginolyticus]	291.0	[0..2]	[201..3]
gi\|86151284, gi\|... - gi\|86151284\|ref\|ZP_01069499.1\| superoxide dismutase, Fe [Campylobacter jejuni subsp. jejuni 260.94],...	291.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELRKLPYD TNAFGDFLSA ETFSYHHGKH HNTYVTNLNN LIKDTEFAGK DLVSIIKTSN  60
   61 GGVFNNAAQV YNHDFYFDCI KPSTGCGCGG SCQSIDANLQ AALEKEFGSL ENFKAEFIKG 120
  121 ATGVFGSGWF WLVYNTKNQK LEFVGTSNAA TPITEDKVPL LVVDVWEHAY YVDHRNARPA 180
  181 YLEKFYAHIN WEFVAKAYEW ALKEGMGSVS FYANELHPVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.39794
Match:	1dt0A
Description:	Fe superoxide dismutase (FeSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	4.91912139768437	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	4.91912139768437	bayes_pls_golite062009
oxidoreductase activity	1.47646084593921	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
binding	1.30562201415299	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.424959044318554	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: