YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|84326182
Organism:	Pseudomonas aeruginosa 2192
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|84326182.

Description	E-value	Query Range	Subject Range
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	177.0	[0..1]	[140..2]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	176.0	[0..3]	[141..16]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	176.0	[0..2]	[141..15]
gi\|151467 - gi\|151467\|gb\|AAA25946.1\| PilD-dependent protein	175.0	[0..1]	[142..1]
gi\|34499266, gi\|... - gi\|34499266\|ref\|NP_903481.1\| general secretion pathway protein G [Chromobacterium violaceum ATCC 124...	175.0	[0..1]	[142..4]
gi\|218890699, gi... - gi\|218890699\|ref\|YP_002439563.1\| general secretion pathway protein G [Pseudomonas aeruginosa LESB58]... gi\|126168002, gi... - gi\|254236071\|ref\|ZP_04929394.1\| general secretion pathway protein G [Pseudomonas aeruginosa C3719], ... gi\|254241798, gi... - gi\|254241798\|ref\|ZP_04935120.1\| general secretion pathway protein G [Pseudomonas aeruginosa 2192], g... gi\|15598297, gi\|... - gi\|9949211\|gb\|AAG06489.1\|AE004734_7 general secretion pathway protein G [Pseudomonas aeruginosa PAO1... gi\|11348577 - gi\|11348577\|pir\|\|E83258 general secretion pathway protein G PA3101 [imported] - Pseudomonas aerugino...	174.0	[0..1]	[142..7]
gi\|115586318, gi... - gi\|116051097\|ref\|YP_790072.1\| general secretion pathway protein G [Pseudomonas aeruginosa UCBPP-PA14...	172.0	[0..1]	[142..7]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	172.0	[0..3]	[141..13]
gi\|49075912 - gi\|49075912\|gb\|AAT49508.1\| PA3101 [synthetic construct]	172.0	[0..1]	[142..7]
gi\|90324230, gi\|... - gi\|90414688\|ref\|ZP_01222659.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	171.0	[0..3]	[141..2]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRQQSGFT LIEIMVVVVI LGILAALVVP QVMSRPDQAK VTVAKGDIKA IAAALDMYKL  60
   61 DNFAYPSTQQ GLEALVKKPT GNPQPKNWNK DGYLKKLPVD PWGNPYQYLA PGTKGPFDLY 120
  121 SLGADGKEGG SDNDADIGNW DN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits