YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254241854, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254241854, gi....

Description	E-value	Query Range	Subject Range
gi\|110647721, gi... - gi\|110834610\|ref\|YP_693469.1\| P-protein, chorismate mutase/prephenate dehydratase [Alcanivorax borku...	0.0	[1..365]	[1..360]
gi\|67158242, gi\|... - gi\|67158242\|ref\|ZP_00419292.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Azotobacte... gi\|226943700, gi... - gi\|67158242\|ref\|ZP_00419292.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Azotobacte...	0.0	[1..365]	[1..365]
PHEA_PSEST - P-protein OS=Pseudomonas stutzeri GN=pheA PE=3 SV=2	0.0	[1..365]	[1..365]
gi\|49086200 - gi\|49086200\|gb\|AAT51335.1\| PA3166 [synthetic construct]	0.0	[1..365]	[1..365]
gi\|95109657 - gi\|95109657\|emb\|CAK14358.1\| bifunctional chorismate mutase/prephenate dehydratase PheA [Pseudomonas ... gi\|95109657, gi\|... - gi\|95109657\|emb\|CAK14358.1\| bifunctional chorismate mutase/prephenate dehydratase PheA [Pseudomonas ...	0.0	[1..365]	[1..364]
gi\|70731662, gi\|... - gi\|70731662\|ref\|YP_261404.1\| chorismate mutase/prephenate dehydrogenase [Pseudomonas fluorescens Pf-...	0.0	[1..365]	[1..364]
gi\|94413562, gi\|... - gi\|94413562\|ref\|ZP_01293442.1\| hypothetical protein PaerP_01004657 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..365]	[1..365]
gi\|48730481, gi\|... - gi\|77460297\|ref\|YP_349804.1\| prephenate dehydratase [Pseudomonas fluorescens Pf0-1], gi\|77384300\|gb\|...	0.0	[1..365]	[1..364]
gi\|88800760, gi\|... - gi\|88800760\|ref\|ZP_01116318.1\| Chorismate mutase [Reinekea sp. MED297], gi\|88776536\|gb\|EAR07753.1\| C...	0.0	[2..365]	[11..372]
gi\|23472131, gi\|... - gi\|66046874\|ref\|YP_236715.1\| chorismate mutasea [Pseudomonas syringae pv. syringae B728a], gi\|632575...	0.0	[1..365]	[1..364]

Back

Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQDQLKAL RLRIDSLDEK LLELISERAR CAQDVARVKT QTLGEGEAPV FYRPEREAWV  60
   61 LKHIMQLNKG PLDNEEVARL FREIMSSCLA LEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.221849
Match:	2d8dA
Description:	No description for 2d8dA was found.

Predicted functions:

Term	Confidence	Notes
chorismate mutase activity	3.78733095924257	bayes_pls_golite062009
catalytic activity	1.09506175640279	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [94-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLKVAYLGPE GTFTQAAALK HFGNAVISTP MAAIDEVFRE VAAGAVNFGV VPVENSTEGA  60
   61 VNHTLDSFLE HDMVICGEVE LRIHHHLLVG ETTKTDNITR IYSHAQSLAQ CRKWLDSHYP 120
  121 SVERVAVSSN ADAAKRVKSE WNSAAIAGDM AASLYDLSKL HEKIEDRPDN STRFLIIGNQ 180
  181 EVPPTGDDKT SIIVSMRNKP GALHELLVPF HNNGIDLTRI ETRPSRSGKW TYVFFIDFVG 240
  241 HHKEPLIKDV LEKIGQEAVA LKVLGSYPKA VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.154902
Match:	2qmxA
Description:	No description for 2qmxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: