YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254244076, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254244076, gi....

Description	E-value	Query Range	Subject Range
gi\|152986380, gi... - gi\|94415413\|ref\|ZP_01295254.1\| hypothetical protein PaerP_01002781 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-54	[1..207]	[1..207]
gi\|49079420 - gi\|49079420\|gb\|AAT49890.1\| PA5042 [synthetic construct]	7.0E-54	[1..207]	[1..207]
gi\|77380638, gi\|... - gi\|77456635\|ref\|YP_346140.1\| pilus assembly protein, PilO [Pseudomonas fluorescens Pf0-1], gi\|773806...	2.0E-53	[1..207]	[1..207]
gi\|71737284, gi\|... - gi\|71737284\|ref\|YP_272695.1\| type IV pilus biogenesis protein PilO [Pseudomonas syringae pv. phaseol... gi\|455331 - gi\|455331\|gb\|AAA93088.1\| membrane protein	2.0E-53	[1..207]	[1..207]
gi\|213969444, gi... - gi\|213969444\|ref\|ZP_03397581.1\| type IV pilus biogenesis protein PilO [Pseudomonas syringae pv. toma... gi\|28872243, gi\|... - gi\|28872243\|ref\|NP_794862.1\| type IV pilus biogenesis protein PilO [Pseudomonas syringae pv. tomato ... tr\|Q87V11\|Q87V11... - Type IV pilus biogenesis protein PilO OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilO PE=...	3.0E-53	[1..207]	[1..207]
gi\|53726587, gi\|... - gi\|53726587\|ref\|ZP_00347626.1\| COG3167: Tfp pilus assembly protein PilO [Pseudomonas aeruginosa UCBP... gi\|126170182, gi... - gi\|84317711\|ref\|ZP_00966149.1\| COG3167: Tfp pilus assembly protein PilO [Pseudomonas aeruginosa C371...	4.0E-53	[1..207]	[1..207]
gi\|63254379, gi\|... - gi\|66043672\|ref\|YP_233513.1\| pilus assembly protein, PilO [Pseudomonas syringae pv. syringae B728a],...	5.0E-53	[1..207]	[1..207]
gi\|78692406, gi\|... - gi\|78692406\|ref\|ZP_00856937.1\| type IV pilus biogenesis protein PilO [Shewanella sp. MR-7], gi\|78508... gi\|113886712, gi... - gi\|82497273\|ref\|ZP_00882830.1\| type IV pilus biogenesis protein PilO [Shewanella sp. MR-4], gi\|82404...	2.0E-51	[3..205]	[1..195]
gi\|117922329, gi... - gi\|78688066\|ref\|ZP_00852790.1\| type IV pilus biogenesis protein PilO [Shewanella sp. ANA-3], gi\|7850...	4.0E-51	[3..205]	[1..195]
gi\|126176301, gi... - gi\|68540923\|ref\|ZP_00580671.1\| Pilus assembly protein, PilO [Shewanella baltica OS155], gi\|68521308\|...	2.0E-50	[3..205]	[1..195]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLASSLESL RKIDINDLDL NNIGSWPAAV KVIVCVLLTA AVLALGYNFH LSDMQAQLEQ  60
   61 QAAEEETLKQ QFSTKAFQAA NLEAYKAQMK EMEESFGALL RQLPSDTEVP GLLEDITRTG 120
  121 LGSGLEFEEI KLLPEVAQQF YIELPIQISV VGGYHDLATF VSGVSSLPRI VTLHDFEIKP 180
  181 VAPGSTSKLR MSILAKTYRY NDKGLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.39794
Match:	PF04350.4
Description:	No description for PF04350.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits