YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|84328278, gi\|...
Organism:	Pseudomonas aeruginosa 2192
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|84328278, gi|....

Description	E-value	Query Range	Subject Range
gi\|49084568 - gi\|49084568\|gb\|AAT51210.1\| PA1342 [synthetic construct]	3.0E-70	[1..302]	[1..302]
gi\|107100793 - gi\|107100793\|ref\|ZP_01364711.1\| hypothetical protein PaerPA_01001821 [Pseudomonas aeruginosa PACS2] gi\|115584515, gi... - gi\|53727643\|ref\|ZP_00138969.2\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	7.0E-70	[1..302]	[1..302]
gi\|152985923, gi... - gi\|94416782\|ref\|ZP_01296605.1\| hypothetical protein PaerP_01001323 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-69	[1..302]	[1..302]
gi\|11351116 - pir\|\|D83010 probable binding protein component of ABC transporter PA5082 [imported] - Pseudomonas ae... gi\|53726608, gi\|... - gi\|53726608\|ref\|ZP_00141557.2\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|9951376, gi\|1... - gi\|9951376\|gb\|AAG08467.1\|AE004921_4 probable binding protein component of ABC transporter [Pseudomon...	3.0E-68	[1..300]	[1..299]
gi\|56314062, gi\|... - gi\|56478019\|ref\|YP_159608.1\| putative ABC transporter, glutamate receptor [Aromatoleum aromaticum Eb...	4.0E-67	[1..300]	[1..298]
gi\|84360756 - gi\|84360756\|ref\|ZP_00985448.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	9.0E-67	[1..300]	[1..297]
gi\|71064880, gi\|... - gi\|71064880\|ref\|YP_263607.1\| ABC glutamate/aspartate transporter, periplasmic binding protein GltI [...	1.0E-66	[5..296]	[11..309]
gi\|72607515, gi\|... - gi\|74019703\|ref\|ZP_00690316.1\| extracellular solute-binding protein, family 3 [Burkholderia ambifari...	3.0E-66	[1..300]	[1..297]
gi\|71735103, gi\|... - gi\|71735103\|ref\|YP_276039.1\| amino acid ABC transporter, periplasmic amino acid-binding protein [Pse...	4.0E-66	[1..301]	[55..355]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIAPSLLST AIVAALLSAP VVADELTGTL KKIKETGTIT LGHRDASIPF SYLGTEPGKP  60
   61 IGYSHDLQLK VVEAVKKELN LPELKVRYNL VTSQTRIPLV QNGTVDIECG STTNNEERQK 120
  121 QVDFSVGIFE VGTRLLSKKT ANIKDFDDLK GKNVVTTAGT TSERLLKAMN ADKKMGMNII 180
  181 SAKDHGESFM MLESGRAVAF MMDDALLYGE MAKAKKPDDW VVGGTPQSFE IYGCMVRKGD 240
  241 AAFKKVVDKA ITDTYASGEV NKIYDKWFTQ PIPPKGLNLN FPMSEELKKL IASPTDKAAE 300
  301 QM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	2ia4A
Description:	No description for 2ia4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits