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View Structure Prediction Details

Protein: gi|126193367, gi...
Organism: Pseudomonas aeruginosa 2192
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126193367, gi....

Description E-value Query
Range		 Subject
Range
SELU_PSEU2 - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=selU PE=3 SV=1
 0.0 [1..367] [1..366]
SELU_PSE14 - tRNA 2-selenouridine synthase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=...
 0.0 [1..367] [1..366]
SELU_PSESM - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=selU PE=3 SV=1
SELU_PSESM - tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato GN=selU PE=3 SV=1
 0.0 [1..367] [1..366]
SELU_PSEPK - tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain KT2440) GN=selU PE=3 SV=1
 0.0 [1..368] [1..368]
SELU_PSEE4 - tRNA 2-selenouridine synthase OS=Pseudomonas entomophila (strain L48) GN=selU PE=3 SV=1
gi|95109198 - gi|95109198|emb|CAK13895.1| conserved hypothetical protein [Pseudomonas entomophila L48]
 0.0 [1..367] [1..366]
SELU_PSEP1 - tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=selU PE=3 SV=1
 0.0 [1..368] [1..368]
SELU_SHESW - tRNA 2-selenouridine synthase OS=Shewanella sp. (strain W3-18-1) GN=selU PE=3 SV=1
SELU_SHEPC - tRNA 2-selenouridine synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=selU PE=3 ...
 0.0 [3..367] [6..369]
SELU_SHEON - tRNA 2-selenouridine synthase OS=Shewanella oneidensis (strain MR-1) GN=selU PE=3 SV=1
SO0195 - RNA 2-selenouridine synthase, ybbB
 0.0 [3..364] [6..366]
SELU_PSEA7 - tRNA 2-selenouridine synthase OS=Pseudomonas aeruginosa (strain PA7) GN=selU PE=3 SV=1
 0.0 [1..369] [1..369]
SELU_SHESR - tRNA 2-selenouridine synthase OS=Shewanella sp. (strain MR-7) GN=selU PE=3 SV=1
 0.0 [3..367] [6..369]

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Predicted Domain #1
Region A:
Residues: [1-230] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDNTQHYRE LFLDDIPLMD VRAPVEYHKG AFPNTVNRPL MNDIERQKVG TSYKQHGQQA  60
   61 AIALGHELVC GALKAERLAA WKAFAEANPN GYLYCFRGGL RSQIVQQWLK QDAGIDYPRV 120
  121 IGGYKALRNF LFETTRAAVD ECDFVLVGGL TGCGKTEVIA ALDNSLDLEG HANHRGSSFG 180
  181 RRATPQPAQI DFENRLAIDI LKKRHRGVGQ FVLEDEGRIV GSCSLPLELY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 1bohA
Description: SULFUR-SUBSTITUTED RHODANESE (ORTHORHOMBIC FORM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
thiosulfate sulfurtransferase activity 3.4060283973149 bayes_pls_golite062009
sulfurtransferase activity 2.00214292806095 bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups 1.49017617674976 bayes_pls_golite062009
catalytic activity 1.05774816707958 bayes_pls_golite062009
transferase activity 0.503171603133473 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [231-369] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGMQGYPLVW LEDAFEQRVE RILRDYVIDL RSEFERVVGV EEGFAAFSAY LQKSLAGIVK  60
   61 RLGGERYQRL AAILVQALEE QGRDGSVDTH RGWIEGLLKE YYDPMYAFQR QSKEDRVEFR 120
  121 GNQAEVIGYL RQRQALRPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle