YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254236312, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254236312, gi....

Description	E-value	Query Range	Subject Range
gi\|49082058 - gi\|49082058\|gb\|AAT50429.1\| PA3350 [synthetic construct]	3.0E-66	[1..232]	[1..232]
gi\|107102882 - gi\|107102882\|ref\|ZP_01366800.1\| hypothetical protein PaerPA_01003950 [Pseudomonas aeruginosa PACS2]	9.0E-66	[1..232]	[1..232]
gi\|116051365, gi... - gi\|46164182\|ref\|ZP_00136722.2\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona...	2.0E-65	[1..232]	[1..232]
gi\|94413584, gi\|... - gi\|94413584\|ref\|ZP_01293463.1\| hypothetical protein PaerP_01004600 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-64	[1..232]	[1..232]
gi\|77460475, gi\|... - gi\|77460475\|ref\|YP_349982.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	7.0E-63	[1..232]	[1..232]
gi\|70731829, gi\|... - gi\|70731829\|ref\|YP_261571.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	2.0E-62	[1..232]	[22..253]
gi\|82737704, gi\|... - gi\|82737704\|ref\|ZP_00900550.1\| flagella basal body P-ring formation protein FlgA [Pseudomonas putida...	6.0E-62	[1..232]	[19..250]
gi\|24986118, gi\|... - gi\|26991083\|ref\|NP_746508.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas puti...	2.0E-59	[15..232]	[8..225]
gi\|213927892, gi... - gi\|213967591\|ref\|ZP_03395739.1\| flagellar protein [Pseudomonas syringae pv. tomato T1], gi\|213927892... gi\|28869130, gi\|... - gi\|28869130\|ref\|NP_791749.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas syri... tr\|Q885A9\|Q885A9... - Flagellar protein, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1926 PE=4 SV...	1.0E-58	[13..232]	[30..248]
gi\|66046716, gi\|... - gi\|66046716\|ref\|YP_236557.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas syri...	4.0E-58	[11..232]	[32..252]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLGYLCAA NNSQAQGFTA PEVLIGSTQG FLEFKVEEYL QNSGLDGRYQ IQVNRVDPRL  60
   61 RLAECDRDLT LSQESPAQPI GRVTVRISCE GSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWTIFMPAQV KLFRQVVVAV QPLKRAHVLE DADIALVERD VGLLTQGYLT DPARVVGQKL  60
   61 RRPVVNDQVL APVFLEQAEA VRKGDQVVIL ARTATINVKM PGEALSDGAP GQQIRVRNLR 120
  121 SQRIIKARVI EPGTVEVNM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.73
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits