YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194549956, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194549956, gi....

Description	E-value	Query Range	Subject Range
gi\|71735545, gi\|... - gi\|71735545\|ref\|YP_276190.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. phaseolicola 1448A],...	6.0E-81	[1..193]	[1..193]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	1.0E-80	[1..191]	[1..198]
SODF_PSEPK - Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3 gi\|148546197, gi... - gi\|82736011\|ref\|ZP_00898872.1\| superoxide dismutase (Fe) [Pseudomonas putida F1], gi\|82716998\|gb\|EAP... tr\|I7B8Q8\|I7B8Q8... - Superoxide dismutase OS=Pseudomonas putida (strain DOT-T1E) GN=sodB PE=3 SV=1	2.0E-80	[1..192]	[1..192]
gi\|23104988, gi\|... - gi\|67156297\|ref\|ZP_00417890.1\| Superoxide dismutase [Azotobacter vinelandii AvOP], gi\|6552344\|dbj\|BA... gi\|67086056, gi\|... - gi\|67156297\|ref\|ZP_00417890.1\| Superoxide dismutase [Azotobacter vinelandii AvOP], gi\|67086056\|gb\|EA...	2.0E-80	[1..193]	[1..193]
gi\|213924986, gi... - gi\|213970314\|ref\|ZP_03398444.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. tomato T1], gi\|21... tr\|Q87X27\|Q87X27... - Superoxide dismutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=sodB PE=3 SV=1 gi\|28854750, gi\|... - gi\|28871499\|ref\|NP_794118.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. tomato str. DC3000],...	2.0E-80	[1..193]	[1..193]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	2.0E-80	[1..191]	[1..198]
gi\|63257993, gi\|... - gi\|66047286\|ref\|YP_237127.1\| superoxide dismutase [Pseudomonas syringae pv. syringae B728a], gi\|6325... gi\|4581924 - gi\|4581924\|gb\|AAD24797.1\|AF121079_1 iron-superoxide dismutase [Pseudomonas syringae pv. syringae]	5.0E-80	[1..193]	[1..193]
gi\|95109321 - gi\|95109321\|emb\|CAK14021.1\| superoxide dismutase [Fe] [Pseudomonas entomophila L48] gi\|104780334, gi... - gi\|95109321\|emb\|CAK14021.1\| superoxide dismutase [Fe] [Pseudomonas entomophila L48], gi\|104780334\|re...	6.0E-80	[1..192]	[1..192]
gi\|68346450, gi\|... - gi\|70732151\|ref\|YP_261907.1\| superoxide dismutase (Fe) [Pseudomonas fluorescens Pf-5], gi\|68346450\|g...	7.0E-80	[1..192]	[1..192]
gi\|77384710, gi\|... - gi\|77460707\|ref\|YP_350214.1\| superoxide dismutase [Pseudomonas fluorescens Pf0-1], gi\|77384710\|gb\|AB...	9.0E-80	[1..192]	[1..192]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFELPPLPY EKNALEPHIS AETLEYHHDK HHNTYVVNLN NLIPGTEFEG KSLEEIVKSS  60
   61 SGGIFNNAAQ VWNHTFYWNC LSPNGGGQPT GALADAINAA FGSFDKFKEE FTKTSVGTFG 120
  121 SGWGWLVKKA DGSLALASTI GAGNPLTSGD TPLLTCDVWE HAYYIDYRNL RPKYVEAFWN 180
  181 LVNWDFVAKN FAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	1dt0A
Description:	Fe superoxide dismutase (FeSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	4.91912139768437	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	4.91912139768437	bayes_pls_golite062009
oxidoreductase activity	1.47646084593921	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
binding	1.30562201415299	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.424959044318554	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: