YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|71162957, gi\|...
Organism:	Xylella fastidiosa Dixon
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|71162957, gi|....

Description	E-value	Query Range	Subject Range
gi\|68202087, gi\|... - gi\|68230339\|ref\|ZP_00569524.1\| Ribosomal protein S20p [Frankia sp. EAN1pec], gi\|68202087\|gb\|EAN16274...	108.0	[0..22]	[109..92]
gi\|46912215, gi\|... - gi\|54307792\|ref\|YP_128812.1\| putative ribosomal protein S20 [Photobacterium profundum SS9], gi\|46912...	100.0	[0..17]	[106..8]
gi\|62257754 - gi\|62257754\|gb\|AAX77736.1\| unknown protein [synthetic construct]	100.0	[0..16]	[109..22]
RS20_ALKEH - 30S ribosomal protein S20 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	98.0	[0..21]	[107..1]
gi\|67985695, gi\|... - gi\|69289459\|ref\|ZP_00618728.1\| Ribosomal protein S20p [Kineococcus radiotolerans SRS30216], gi\|67985...	98.0	[0..19]	[95..43]
gi\|89203486, gi\|... - gi\|89203486\|ref\|ZP_01182144.1\| Ribosomal protein S20p [Bacillus cereus subsp. cytotoxis NVH 391-98],...	97.0	[0..15]	[105..31]
gi\|85705686, gi\|... - gi\|85705686\|ref\|ZP_01036783.1\| ribosomal protein S20 [Roseovarius sp. 217], gi\|85669676\|gb\|EAQ24540....	96.0	[0..21]	[106..1]
RS20_PHOLL - 30S ribosomal protein S20 OS=Photorhabdus luminescens subsp. laumondii GN=rpsT PE=3 SV=1 RS20_PHOLL - 30S ribosomal protein S20 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	96.0	[0..21]	[107..1]
RS20_SODGM - 30S ribosomal protein S20 OS=Sodalis glossinidius (strain morsitans) GN=rpsT PE=3 SV=1	95.0	[0..21]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIIIGLIF HQWISEESIS VANIKSAKKR VKQTVVRNER NTAQRSMLRT AVKKVIKALS  60
   61 IKDIAGAETA FAVAQPILDR FSSRGLIHKN KAARHKSRLT ARIKALKTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1vs5T
Description:	No description for 1vs5T was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits