YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208967282, gi...
Organism:	synthetic construct
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208967282, gi....

Description	E-value	Query Range	Subject Range
gi\|109473109, gi... - gi\|27708842\|ref\|XP_216097.1\| PREDICTED: similar to replication protein A3 [Rattus norvegicus], gi\|15...	176.0	[0..1]	[121..1]
RFA3_MOUSE - Replication protein A 14 kDa subunit OS=Mus musculus GN=Rpa3 PE=1 SV=1	172.0	[0..1]	[121..1]
gi\|114612144 - gi\|114612144\|ref\|XP_527665.2\| PREDICTED: replication protein A3, 14kDa [Pan troglodytes]	172.0	[0..1]	[121..1]
gi\|77735809, gi\|... - gi\|77735809\|ref\|NP_001029599.1\| replication protein A3, 14kDa [Bos taurus], gi\|74268179\|gb\|AAI03269....	170.0	[0..1]	[120..1]
gi\|109067370, gi... - gi\|109067372\|ref\|XP_001086985.1\| PREDICTED: similar to replication protein A3, 14kDa isoform 2 [Maca...	168.0	[0..1]	[121..1]
gi\|73976423 - gi\|73976423\|ref\|XP_538570.2\| PREDICTED: similar to replication protein A3, 14kDa [Canis familiaris]	168.0	[0..1]	[121..1]
gi\|47940029 - gi\|47940029\|gb\|AAH71377.1\| Zgc:56310 protein [Danio rerio]	149.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDMMDLPRS RINAGMLAQF IDKPVCFVGR LEKIHPTGKM FILSDGEGKN GTIELMEPLD  60
   61 EEISGIVEVV GRVTAKATIL CTSYVQFKED SHPFDLGLYN EAVKIIHDFP QFYPLGIVQH 120
  121 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	2pi2E
Description:	No description for 2pi2E was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits