YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145360829, gi...
Organism:	Arabidopsis thaliana
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145360829, gi....

Description	E-value	Query Range	Subject Range
gi\|42569794, gi\|... - gi\|61742659\|gb\|AAX55150.1\| hypothetical protein At2g40316 [Arabidopsis thaliana], gi\|42569794\|ref\|NP...	180.0	[0..65]	[276..3]
gi\|114194627, gi... - gi\|115389452\|ref\|XP_001212231.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	171.0	[0..24]	[269..34]
MPRD_RAT - Cation-dependent mannose-6-phosphate receptor OS=Rattus norvegicus GN=M6pr PE=1 SV=1	165.0	[0..79]	[274..70]
gi\|108707651, gi... - gi\|115452463\|ref\|NP_001049832.1\| Os03g0296700 [Oryza sativa (japonica cultivar-group)], gi\|113548303...	165.0	[0..8]	[250..18]
MPRD_MOUSE - Cation-dependent mannose-6-phosphate receptor OS=Mus musculus GN=M6pr PE=1 SV=1	164.0	[0..79]	[274..70]
gi\|90085425 - gi\|90085425\|dbj\|BAE91453.1\| unnamed protein product [Macaca fascicularis] CCDS8598.1_1 - null gi\|109095542, gi... - gi\|109095544\|ref\|XP_001113952.1\| PREDICTED: cation-dependent mannose-6-phosphate receptor isoform 6 ...	163.0	[0..79]	[274..70]
MPRD_BOVIN - Cation-dependent mannose-6-phosphate receptor OS=Bos taurus GN=M6PR PE=1 SV=1	162.0	[0..77]	[274..69]
gi\|62897143 - gi\|62897143\|dbj\|BAD96512.1\| cation-dependent mannose-6-phosphate receptor precursor variant [Homo sa...	162.0	[0..79]	[274..69]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKLWIPRF ILITLLFISS RVNSQCEFSF TGRNKVFHFN LASSIRNYPH GVLSEDGFYK  60
   61 VEANSSVLWF QLCDVLIFNH DPPRCVGCED CGGPSHCGTS CSALVSENVR GYDVCTSLGH 120
  121 ASSTKVDIID KEDPGKGVIV QMSTGNRNQN CSLSVSVICQ KTKVDGPLTL AKSGTCQYAT 180
  181 QLRHPAGCAA AISGHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.09691
Match:	1q25A
Description:	Crystal structure of N-terminal 3 domains of CI-MPR
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [197-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGWGWFSTLL IIILCLFGAY LVGGAVYRYF SLGIRGIDVI PNMDYWATVP HSIQSCFGSL  60
   61 FSRFGGSIRG QQTSYSQVNF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits