YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD_BURMS
Organism:	Burkholderia mallei SAVP1
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD_BURMS.

Description	E-value	Query Range	Subject Range
gi\|167737837 - gi\|167737837\|ref\|ZP_02410611.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 14] gi\|167815022 - gi\|167815022\|ref\|ZP_02446702.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 91] gi\|167718830 - gi\|167718830\|ref\|ZP_02402066.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei DM98] gi\|167893531 - gi\|167893531\|ref\|ZP_02480933.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 7894] gi\|134283889, gi... - gi\|134283889\|ref\|ZP_01770585.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 305], gi... gi\|167901979 - gi\|167901979\|ref\|ZP_02489184.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei NCTC 131... gi\|167823439 - gi\|167823439\|ref\|ZP_02454910.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 9] gi\|167844988 - gi\|167844988\|ref\|ZP_02470496.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei B7210] PSD_BURP1 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain 1710b) GN=psd PE=3 S... gi\|237504642, gi... - gi\|237811569\|ref\|YP_002896020.1\| putative phosphatidylserine decarboxylase homolog [Burkholderia pse... PSD_BURPS - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei GN=psd PE=3 SV=1 PSD_BURPS - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain K96243) GN=psd PE=3 ... gi\|83678364, gi\|... - gi\|83678364\|ref\|ZP_00940092.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia pseudomallei ... gi\|99909806, gi\|... - gi\|99909806\|ref\|ZP_01316917.1\| hypothetical protein Bpse1_03003736 [Burkholderia pseudomallei 1655],... PSD_BURP0 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain 1106a) GN=psd PE=3 S... gi\|161357453, gi... - gi\|82536005\|ref\|ZP_00895015.1\| hypothetical protein Bpse110_02002704 [Burkholderia pseudomallei 1106... gi\|254190563, gi... - gi\|67754604\|ref\|ZP_00493510.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia pseudomallei ... gi\|67761478, gi\|... - gi\|67761478\|ref\|ZP_00500187.1\| COG0688: Phosphatidylserine decarboxylase [Burkholderia pseudomallei ... gi\|67683899, gi\|... - gi\|90291922\|ref\|ZP_01211541.1\| hypothetical protein Bpse17_02003391 [Burkholderia pseudomallei 1710a... PSD_BURP6 - Phosphatidylserine decarboxylase proenzyme OS=Burkholderia pseudomallei (strain 668) GN=psd PE=3 SV=... gi\|167910213 - gi\|167910213\|ref\|ZP_02497304.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei 112] gi\|167918245 - gi\|167918245\|ref\|ZP_02505336.1\| phosphatidylserine decarboxylase [Burkholderia pseudomallei BCC215]	254.0	[0..1]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYPHPIIAR EGWPFIAIAA VVALLIHAVG GFGLAWPFWL LLVFVVQFFR DPPRAVPTQA  60
   61 NAVLCPADGR IVAVETAHDP YADREALKIS VFMNVFNVHS QRSPVDGAVQ KVEYFPGAFL 120
  121 NAALDKASAE NERNAVVIQT GAGHTVTAVQ IAGLVARRIL CYVRAGEPLS RGQRYGFIRF 180
  181 GSRVDVYLPK GSRARVSIGE KVSASSTILA ELPEQP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.05
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: