YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85676878, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85676878, gi|....

Description	E-value	Query Range	Subject Range
gi\|29377107, gi\|... - gi\|29377107\|ref\|NP_816261.1\| hypothetical protein EF2622 [Enterococcus faecalis V583], gi\|29344573\|g... gi\|229545010, gi... - gi\|229545010\|ref\|ZP_04433735.1\| conserved hypothetical protein [Enterococcus faecalis TX1332], gi\|22... gi\|229305491, gi... - gi\|229549254\|ref\|ZP_04437979.1\| conserved hypothetical protein [Enterococcus faecalis ATCC 29200], g... gi\|227176743, gi... - gi\|227554117\|ref\|ZP_03984164.1\| conserved hypothetical protein [Enterococcus faecalis HH22], gi\|2271... gi\|238830145, gi... - gi\|238857217\|ref\|ZP_04647467.1\| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11], g...	92.0	[0..2]	[76..13]
gi\|25401196 - pir\|\|F86710 hypothetical protein ygiH [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gi\|15672668, gi\|... - gi\|15672668\|ref\|NP_266842.1\| hypothetical protein L86826 [Lactococcus lactis subsp. lactis Il1403], ...	91.0	[0..2]	[73..27]
gi\|81243430, gi\|... - gi\|82779282\|ref\|YP_405631.1\| hypothetical protein SDY_4239 [Shigella dysenteriae Sd197], gi\|81243430...	90.0	[0..1]	[76..1]
gi\|116107136, gi... - gi\|62463583\|ref\|ZP_00382906.1\| COG3592: Uncharacterized conserved protein [Lactococcus lactis subsp....	89.0	[0..2]	[73..13]
gi\|157069272, gi... - gi\|75197978\|ref\|ZP_00708048.1\| COG3592: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|75188843, gi\|... - gi\|75188843\|ref\|ZP_00702110.1\| COG3592: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|74314612, gi\|... - gi\|74314612\|ref\|YP_313031.1\| hypothetical protein SSON_4303 [Shigella sonnei Ss046], gi\|73858089\|gb\|...	89.0	[0..1]	[76..1]
gi\|227836176, gi... - gi\|227886834\|ref\|ZP_04004639.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783617... gi\|26111373, gi\|... - gi\|26250941\|ref\|NP_756981.1\| hypothetical protein c5133 [Escherichia coli CFT073], gi\|26111373\|gb\|AA...	89.0	[0..1]	[76..1]
gi\|218367983, gi... - gi\|218561214\|ref\|YP_002394127.1\| hypothetical protein ECS88_4630 [Escherichia coli S88], gi\|21836798... gi\|91213673, gi\|... - gi\|91213673\|ref\|YP_543659.1\| hypothetical protein UTI89_C4720 [Escherichia coli UTI89], gi\|91075247\|... gi\|237703715, gi... - gi\|237703715\|ref\|ZP_04534196.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	87.0	[0..1]	[76..1]
gi\|254879064 - gi\|254879064\|ref\|ZP_05251774.1\| YjdI protein [Listeria monocytogenes FSL J2-071] gi\|254853735 - gi\|254853735\|ref\|ZP_05243083.1\| YjdI protein [Listeria monocytogenes FSL R2-503] gi\|255520127 - gi\|255520127\|ref\|ZP_05387364.1\| YjdI protein [Listeria monocytogenes FSL J1-175] gi\|46906373, gi\|... - gi\|46906373\|ref\|YP_012762.1\| hypothetical protein LMOf2365_0151 [Listeria monocytogenes str. 4b F236... gi\|254993077 - gi\|254993077\|ref\|ZP_05275267.1\| YjdI protein [Listeria monocytogenes FSL J2-064] gi\|133728435, gi... - gi\|153165116\|ref\|ZP_01926134.1\| hypothetical protein LMHG_00949 [Listeria monocytogenes FSL N1-017],... gi\|254933068, gi... - gi\|254933068\|ref\|ZP_05266427.1\| YjdI protein [Listeria monocytogenes HPB2262], gi\|153200562\|ref\|ZP_0... gi\|47019471, gi\|... - gi\|47092269\|ref\|ZP_00230061.1\| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]... gi\|217965773, gi... - gi\|217965773\|ref\|YP_002351451.1\| hypothetical protein LMHCC_2502 [Listeria monocytogenes HCC23], gi\|... gi\|254825948 - gi\|254825948\|ref\|ZP_05230949.1\| YjdI protein [Listeria monocytogenes FSL J1-194] gi\|226222772, gi... - gi\|226222772\|ref\|YP_002756879.1\| YjdI protein [Listeria monocytogenes Clip81459], gi\|225875234\|emb\|C...	87.0	[0..2]	[76..3]
gi\|218707741, gi... - gi\|218707741\|ref\|YP_002415260.1\| hypothetical protein ECUMN_4659 [Escherichia coli UMN026], gi\|21843... gi\|75239097, gi\|... - gi\|75239097\|ref\|ZP_00723077.1\| COG3592: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110644484, gi... - gi\|110644484\|ref\|YP_672214.1\| hypothetical protein ECP_4369 [Escherichia coli 536], gi\|110346076\|gb\|...	87.0	[0..1]	[76..1]
gi\|149951343, gi... - gi\|77686089\|ref\|ZP_00801459.1\| Protein of unknown function DUF1271 [Alkaliphilus metalliredigenes QY...	87.0	[0..3]	[75..67]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQALLDGGY RCYTGEKIDV YFNTAICQHS GNCVRGNGKL FNLKRKPWIM PDEVDVATVV  60
   61 KVIDTCPSGA LKYRHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1rofA
Description:	NMR STUDY OF 4FE-4S FERREDOXIN OF THERMATOGA MARITIMA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits