YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|188488578, gi...
Organism:	Escherichia coli 53638
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|188488578, gi....

Description	E-value	Query Range	Subject Range
gi\|88711060, gi\|... - gi\|88711060\|ref\|ZP_01105148.1\| molybdopterin oxidoredutase membrane subunit [Flavobacteriales bacter...	145.0	[0..3]	[274..73]
gi\|86131980, gi\|... - gi\|86131980\|ref\|ZP_01050576.1\| molybdopterin oxidoredutase membrane subunit [Cellulophaga sp. MED134...	144.0	[0..3]	[274..72]
gi\|88784801, gi\|... - gi\|88803922\|ref\|ZP_01119442.1\| molybdopterin oxidoredutase membrane subunit [Robiginitalea biformata...	143.0	[0..3]	[274..73]
gi\|68553334, gi\|... - gi\|68553334\|ref\|ZP_00592711.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	141.0	[0..4]	[251..325]
gi\|21957599, gi\|... - gi\|22124777\|ref\|NP_668200.1\| anaerobic dimethyl sulfoxide reductase chain C [Yersinia pestis KIM], g... gi\|45440220, gi\|... - gi\|45440220\|ref\|NP_991759.1\| anaerobic dimethyl sulfoxide reductase chain C [Yersinia pestis biovar ...	141.0	[0..1]	[286..22]
gi\|117623776, gi... - gi\|117623776\|ref\|YP_852689.1\| oxidoreductase, membrane subunit [Escherichia coli APEC O1], gi\|115512...	140.0	[0..1]	[286..81]
gi\|83855682, gi\|... - gi\|83855682\|ref\|ZP_00949211.1\| molybdopterin oxidoredutase membrane subunit [Croceibacter atlanticus...	138.0	[0..6]	[274..50]
gi\|83814119, gi\|... - gi\|83814119\|ref\|YP_446211.1\| polysulfide reductase chain C [Salinibacter ruber DSM 13855], gi\|837555...	138.0	[0..6]	[274..51]
gi\|192955949, gi... - gi\|75234421\|ref\|ZP_00718782.1\| COG3302: DMSO reductase anchor subunit [Escherichia coli E110019], gi...	138.0	[0..1]	[287..1]
gi\|29142390, gi\|... - gi\|29142390\|ref\|NP_805732.1\| anaerobic dimethyl sulfoxide reductase chain C [Salmonella enterica sub... gi\|62179490, gi\|... - gi\|62179490\|ref\|YP_215907.1\| anaerobic dimethyl sulfoxide reductase, subunit C [Salmonella enterica ... gi\|16759837 - gi\|16759837\|ref\|NP_455454.1\| anaerobic dimethyl sulfoxide reductase chain C [Salmonella enterica sub... gi\|25324045, gi\|... - gi\|25324045\|pir\|\|AD0612 anaerobic dimethyl sulfoxide reductase chain C [imported] - Salmonella enter... gi\|16419478, gi\|... - gi\|16764327\|ref\|NP_459942.1\| anaerobic dimethyl sulfoxide reductase subunit C [Salmonella typhimuriu... gi\|194445042, gi... - gi\|194445042\|ref\|YP_002040165.1\| dmso reductase anchor subunit [Salmonella enterica subsp. enterica ... gi\|205340751, gi... - gi\|205340751\|gb\|EDZ27515.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=dmsC] [protein=anaerobic dimethyl sulfoxide reductase subunit C] [protein_id=YP_005236681.1] [... gi\|195631020, gi... - gi\|195631020\|gb\|EDX49606.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enterica s... gi\|168263548, gi... - gi\|205347731\|gb\|EDZ34362.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enterica ... gi\|224582776, gi... - gi\|224582776\|ref\|YP_002636574.1\| anaerobic dimethyl sulfoxide reductase chain C [Salmonella enterica... gi\|199602157, gi... - gi\|200389712\|ref\|ZP_03216323.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enteri... gi\|197264111, gi... - gi\|197264111\|ref\|ZP_03164185.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enteri... gi\|194736452, gi... - gi\|194736452\|ref\|YP_002114018.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enter... gi\|168236876, gi... - gi\|197290119\|gb\|EDY29476.1\| anaerobic dimethyl sulfoxide reductase, C subunit [Salmonella enterica s... gi\|205327468, gi... - gi\|205327468\|gb\|EDZ14232.1\| dmso reductase anchor subunit [Salmonella enterica subsp. enterica serov...	138.0	[0..1]	[287..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGWHEWPL MIFTVFGQCV AGGFIVLALA LLKGDLRAEA QQRVIACMFG LWVLMGIGFI  60
   61 ASMLHLGSPM RAFNSLNRVG ASALSNEIAS GSIFFAVGGI GWLLAMLKKL SPALRTLWLI 120
  121 VTMVLGVIFV WMMVRVYNSI DTVPTWY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIWTPMGFFL TMFMGGPLLG YLLLSLAGVD GWAMRLLPAI SVLALVVSGV VSVMQGAELA  60
   61 TIHSSVQQAA ALVPDYGALM SWRIVLLAVA LCLWIAPQLK GYQPAVPLLS VSFILLLAGE 120
  121 LIGRGVFYGL HMTVGMAVAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits