YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194431426, gi...
Organism:	Shigella dysenteriae 1012
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194431426, gi....

Description	E-value	Query Range	Subject Range
gi\|1788317, gi\|4... - gi\|49176178\|ref\|NP_416511.3\| hypothetical protein b2007 [Escherichia coli K12], gi\|1788317\|gb\|AAC750... gi\|30063449, gi\|... - gi\|30063449\|ref\|NP_837620.1\| hypothetical protein S2177 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|12516185, gi\|... - gi\|15802486\|ref\|NP_288512.1\| hypothetical protein Z3168 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7 str. Sakai] gi\|117624211, gi... - gi\|117624211\|ref\|YP_853124.1\| hypothetical protein APECO1_1105 [Escherichia coli APEC O1], gi\|115513... gi\|218699405, gi... - gi\|218699405\|ref\|YP_002407034.1\| hypothetical protein ECIAI39_1011 [Escherichia coli IAI39], gi\|2183... gi\|218352364, gi... - gi\|218695632\|ref\|YP_002403299.1\| hypothetical protein EC55989_2266 [Escherichia coli 55989], gi\|2183... gi\|74312549, gi\|... - gi\|74312549\|ref\|YP_310968.1\| hypothetical protein SSON_2077 [Shigella sonnei Ss046], gi\|73856026\|gb\|... gi\|218690069, gi... - gi\|218690069\|ref\|YP_002398281.1\| hypothetical protein ECED1_2358 [Escherichia coli ED1a], gi\|2184276... gi\|218365657, gi... - gi\|218558888\|ref\|YP_002391801.1\| hypothetical protein ECS88_2106 [Escherichia coli S88], gi\|21836565... gi\|89108827, gi\|... - gi\|89108827\|ref\|AP_002607.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|227835408, gi... - gi\|227887058\|ref\|ZP_04004863.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783540... gi\|91072869, gi\|... - gi\|91211295\|ref\|YP_541281.1\| hypothetical protein UTI89_C2282 [Escherichia coli UTI89], gi\|91072869\|... gi\|242377653, gi... - gi\|251785380\|ref\|YP_002999684.1\| hypothetical protein B21_01896 [Escherichia coli BL21], gi\|24237765... gi\|218432646, gi... - gi\|218705549\|ref\|YP_002413068.1\| hypothetical protein ECUMN_2353 [Escherichia coli UMN026], gi\|21843... gi\|237704465, gi... - gi\|237704465\|ref\|ZP_04534946.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254288784, gi... - gi\|254288784\|ref\|YP_003054532.1\| hypothetical protein ECD_01910 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973897, gi... - gi\|254161996\|ref\|YP_003045104.1\| hypothetical protein ECB_01910 [Escherichia coli B str. REL606], gi... gi\|218554569, gi... - gi\|218554569\|ref\|YP_002387482.1\| hypothetical protein ECIAI1_2077 [Escherichia coli IAI1], gi\|218361... gi\|170081637, gi... - gi\|170081637\|ref\|YP_001730957.1\| hypothetical protein ECDH10B_2154 [Escherichia coli str. K-12 subst... gi\|13362277 - gi\|13362277\|dbj\|BAB36232.1\| putative alpha helix protein [Escherichia coli O157:H7] gi\|209748274, gi... - gi\|92110362\|emb\|CAJ87631.1\| hypothetical protein [Escherichia coli], pir\|\|F64965 hypothetical protei... gi\|26248381, gi\|... - gi\|26248381\|ref\|NP_754421.1\| hypothetical protein c2534 [Escherichia coli CFT073], gi\|26108785\|gb\|AA... gi\|24052411, gi\|... - gi\|24113391\|ref\|NP_707901.1\| hypothetical protein SF2067 [Shigella flexneri 2a str. 301], gi\|2405241...	171.0	[0..1]	[109..23]
gi\|82543384, gi\|... - gi\|82543384\|ref\|YP_407331.1\| hypothetical protein SBO_0832 [Shigella boydii Sb227], gi\|81244795\|gb\|A...	170.0	[0..1]	[109..23]
gi\|82777462, gi\|... - gi\|82777462\|ref\|YP_403811.1\| hypothetical protein SDY_2237 [Shigella dysenteriae Sd197], gi\|81241610...	170.0	[0..1]	[109..23]
YEEX_SALPB - UPF0265 protein YeeX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yeeX PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yeeX] [protein=hypothetical protein] [protein_id=YP_005238089.1] [location=complement(2185200.... YEEX_SALTY - UPF0265 protein yeeX OS=Salmonella typhimurium GN=yeeX PE=3 SV=1 YEEX_SALTI - UPF0265 protein yeeX OS=Salmonella typhi GN=yeeX PE=3 SV=1 YEEX_SALAR - UPF0265 protein YeeX OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=yeeX PE=3... YEEX_SALCH - UPF0265 protein yeeX OS=Salmonella choleraesuis GN=yeeX PE=3 SV=1 YEEX_SALPA - UPF0265 protein yeeX OS=Salmonella paratyphi A GN=yeeX PE=3 SV=1 YEEX_SALPB - UPF0265 protein yeeX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yeeX PE=3 SV=1 YEEX_SALTI - UPF0265 protein YeeX OS=Salmonella typhi GN=yeeX PE=3 SV=1 gi\|167553149, gi... - gi\|205322339\|gb\|EDZ10178.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|167990968, gi... - gi\|205330563\|gb\|EDZ17327.1\| protein YeeX [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168229372, gi... - gi\|205335704\|gb\|EDZ22468.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|197288424, gi... - gi\|197288424\|gb\|EDY27805.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|204321734, gi... - gi\|204929190\|ref\|ZP_03220333.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Javiana st... YEEX_SALG2 - UPF0265 protein YeeX OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yeeX PE=3 SV=1 YEEX_SALEP - UPF0265 protein YeeX OS=Salmonella enteritidis PT4 (strain P125109) GN=yeeX PE=3 SV=1 gi\|213052545 - gi\|213052545\|ref\|ZP_03345423.1\| hypothetical protein Salmoneentericaenterica_06266 [Salmonella enter... YEEX_SALA4 - UPF0265 protein YeeX OS=Salmonella agona (strain SL483) GN=yeeX PE=3 SV=1 gi\|197263994, gi... - gi\|197263994\|ref\|ZP_03164068.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Saintpaul ... YEEX_SALPK - UPF0265 protein YeeX OS=Salmonella paratyphi A (strain AKU_12601) GN=yeeX PE=3 SV=1 YEEX_SALCH - UPF0265 protein YeeX OS=Salmonella choleraesuis (strain SC-B67) GN=yeeX PE=3 SV=1 YEEX_SALDC - UPF0265 protein YeeX OS=Salmonella dublin (strain CT_02021853) GN=yeeX PE=3 SV=1 YEEX_SALNS - UPF0265 protein YeeX OS=Salmonella newport (strain SL254) GN=yeeX PE=3 SV=1 YEEX_SALTY - UPF0265 protein yeeX OS=Salmonella typhimurium GN=yeeX PE=3 SV=1 YEEX_SALHS - UPF0265 protein YeeX OS=Salmonella heidelberg (strain SL476) GN=yeeX PE=3 SV=1 gi\|194471602, gi... - gi\|194471602\|ref\|ZP_03077586.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Kentucky s... YEEX_SALSV - UPF0265 protein YeeX OS=Salmonella schwarzengrund (strain CVM19633) GN=yeeX PE=3 SV=1 gi\|205338575, gi... - gi\|205338575\|gb\|EDZ25339.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Heidelberg str... YEEX_SALCH - UPF0265 protein yeeX OS=Salmonella choleraesuis GN=yeeX PE=3 SV=1 gi\|205351286, gi... - gi\|205351286\|gb\|EDZ37917.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|195631277, gi... - gi\|195631277\|gb\|EDX49837.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|168818254, gi... - gi\|205344921\|gb\|EDZ31685.1\| protein YeeX [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|16760991 - gi\|16760991\|ref\|NP_456608.1\| hypothetical protein STY2264 [Salmonella enterica subsp. enterica serov... YEEX_SALTY - UPF0265 protein YeeX OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yeeX PE=3 SV... gi\|29141313, gi\|... - gi\|29141313\|ref\|NP_804655.1\| hypothetical protein t0815 [Salmonella enterica subsp. enterica serovar... YEEX_SALPA - UPF0265 protein YeeX OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yeeX PE=3 SV=1 gi\|213850290 - gi\|213850290\|ref\|ZP_03381188.1\| hypothetical protein SentesT_01390 [Salmonella enterica subsp. enter... gi\|238913459 - gi\|238913459\|ref\|ZP_04657296.1\| hypothetical protein SentesTe_20343 [Salmonella enterica subsp. ente... gi\|213974884 - gi\|213974884\|ref\|ZP_03402143.1\| hypothetical protein Salmonellaentericaenterica_10023 [Salmonella en... gi\|214001062 - gi\|214001062\|ref\|ZP_03411797.1\| hypothetical protein Salmonellentericaenterica_11210 [Salmonella ent... YEEX_SALPC - UPF0265 protein YeeX OS=Salmonella paratyphi C (strain RKS4594) GN=yeeX PE=3 SV=1 gi\|213419820 - gi\|213419820\|ref\|ZP_03352886.1\| hypothetical protein Salmonentericaenterica_19378 [Salmonella enteri... gi\|213425578 - gi\|213425578\|ref\|ZP_03358328.1\| hypothetical protein SentesTyphi_07935 [Salmonella enterica subsp. e... gi\|213612653 - gi\|213612653\|ref\|ZP_03370479.1\| hypothetical protein SentesTyp_09169 [Salmonella enterica subsp. ent... gi\|213650803 - gi\|213650803\|ref\|ZP_03380856.1\| hypothetical protein SentesTy_28396 [Salmonella enterica subsp. ente...	159.0	[0..1]	[109..1]
YEEX_ESCFE - UPF0265 protein YeeX OS=Escherichia fergusonii GN=yeeX PE=3 SV=1	159.0	[0..1]	[109..1]
Y1134_SODGM - UPF0265 protein SG1134 OS=Sodalis glossinidius (strain morsitans) GN=SG1134 PE=3 SV=1	152.0	[0..1]	[104..1]
Y855_YERPA - UPF0265 protein YPA_0855 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0855 PE=3 SV=1 Y2420_YERPN - UPF0265 protein YPN_2420 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2420 PE=3 SV=1 Y2514_YERPY - UPF0265 protein YPK_2514 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2514 PE=3... Y1560_YERPE - UPF0265 protein YPO1560/y2607/YP_1448 OS=Yersinia pestis GN=YPO1560 PE=3 SV=1 Y1683_YERPB - UPF0265 protein YPTS_1683 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1683 PE=... Y1571_YERPS - UPF0265 protein YPTB1571 OS=Yersinia pseudotuberculosis GN=YPTB1571 PE=3 SV=1 Y2417_YERP3 - UPF0265 protein YpsIP31758_2417 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|165923387, gi... - gi\|165924327\|ref\|ZP_02220159.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166009274, gi... - gi\|166009274\|ref\|ZP_02230172.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166211724, gi... - gi\|166211724\|ref\|ZP_02237759.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45436132, gi\|... - gi\|45441272\|ref\|NP_992811.1\| hypothetical protein YP_1448 [Yersinia pestis biovar Microtus str. 9100... Y1416_YERPP - UPF0265 protein YPDSF_1416 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1416 PE=3 SV=1 gi\|167400410, gi... - gi\|167400410\|ref\|ZP_02305923.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149366479, gi... - gi\|149366479\|ref\|ZP_01888513.1\| hypothetical protein YPE_1707 [Yersinia pestis CA88-4125], gi\|149290... gi\|167470372 - gi\|167470372\|ref\|ZP_02335076.1\| hypothetical protein YpesF_21397 [Yersinia pestis FV-1] gi\|229894241, gi... - gi\|229894241\|ref\|ZP_04509424.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229703639\|gb\|EEO... gi\|115347310, gi... - gi\|218928699\|ref\|YP_002346574.1\| hypothetical protein YPO1560 [Yersinia pestis CO92], gi\|16121831\|re... gi\|229843655, gi... - gi\|229843655\|ref\|ZP_04463798.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1571_YERPS - UPF0265 protein YPTB1571 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1571 PE=3... gi\|229841544, gi... - gi\|229841544\|ref\|ZP_04461703.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi...	150.0	[0..4]	[104..5]
gi\|167421753, gi... - gi\|167421753\|ref\|ZP_02313506.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167057013, gi... - gi\|167424164\|ref\|ZP_02315917.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|89105280, gi\|... - gi\|89105280\|ref\|ZP_01177802.1\| COG2926: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|21959483, gi\|... - gi\|22126488\|ref\|NP_669911.1\| hypothetical protein y2607 [Yersinia pestis KIM], gi\|21959483\|gb\|AAM861... gi\|117673984 - gi\|117673984\|ref\|ZP_01497042.1\| hypothetical protein YpseI_02002197 [Yersinia pseudotuberculosis IP ...	149.0	[0..4]	[104..7]
Y2560_PECAS - UPF0265 protein ECA2560 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA2560 ... Y2560_ERWCT - UPF0265 protein ECA2560 OS=Erwinia carotovora subsp. atroseptica GN=ECA2560 PE=3 SV=1	147.0	[0..3]	[104..4]
gi\|238793489, gi... - gi\|77978877\|ref\|ZP_00834301.1\| COG2926: Uncharacterized protein conserved in bacteria [Yersinia inte...	145.0	[0..4]	[104..5]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTKPSFQD VLEFVRLFRR KNKLQREIQD VEKKIRDNQK RVLLLDNLSD YIKPGMSVEA  60
   61 IQGIIASMKG DYEDRVDDYI IKNAELSKER RDISKKLKAM GEMKNGEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.744727
Match:	PF04363.3
Description:	No description for PF04363.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits