YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83570800
Organism:	Shigella dysenteriae 1012
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83570800.

Description	E-value	Query Range	Subject Range
gi\|227835950, gi... - gi\|227887600\|ref\|ZP_04005405.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli 8397... gi\|26248929, gi\|... - gi\|26248929\|ref\|NP_754969.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli CFT073]...	428.0	[0..1]	[248..1]
gi\|226901440, gi... - gi\|237705074\|ref\|ZP_04535555.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia sp. 3_2_5... gi\|115513909, gi... - gi\|117624785\|ref\|YP_853698.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli APEC O... gi\|75237417 - gi\|75237417\|ref\|ZP_00721452.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli F... gi\|91211890, gi\|... - gi\|91211890\|ref\|YP_541876.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli UTI89],...	428.0	[0..1]	[248..1]
gi\|75513174 - gi\|75513174\|ref\|ZP_00735616.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli 5... gi\|75257988 - gi\|75257988\|ref\|ZP_00729462.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli E... gi\|75237690 - gi\|75237690\|ref\|ZP_00721706.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli E... gi\|75228861 - gi\|75228861\|ref\|ZP_00715462.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli B... gi\|75209488 - gi\|75209488\|ref\|ZP_00709713.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli B... gi\|83586784 - gi\|83586784\|ref\|ZP_00925415.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli 1...	427.0	[0..1]	[248..1]
gi\|75178159 - gi\|75178159\|ref\|ZP_00698218.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Shigella boydii BS...	427.0	[0..1]	[248..1]
PDXJ_ECOL6 - Pyridoxine 5'-phosphate synthase OS=Escherichia coli O6 GN=pdxJ PE=3 SV=3 PDXJ_ECOL6 - Pyridoxine 5'-phosphate synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=p...	420.0	[0..6]	[248..1]
gi\|110642726, gi... - gi\|110642726\|ref\|YP_670456.1\| pyridoxine 5'-phosphate synthase [Escherichia coli 536], gi\|110344318\|... gi\|190905698, gi... - gi\|191174007\|ref\|ZP_03035524.1\| pyridoxine 5'-phosphate synthase [Escherichia coli F11], gi\|19090569... gi\|218559485, gi... - gi\|218559485\|ref\|YP_002392398.1\| pyridoxine 5'-phosphate synthase [Escherichia coli S88], gi\|2183662... gi\|218428244, gi... - gi\|218690680\|ref\|YP_002398892.1\| pyridoxine 5'-phosphate synthase [Escherichia coli ED1a], gi\|218428...	420.0	[0..6]	[248..1]
gi\|189368383, gi... - gi\|189368383\|gb\|EDU86799.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4501],... gi\|189355300, gi... - gi\|189355300\|gb\|EDU73719.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4401],... gi\|168773510, gi... - gi\|187770734\|gb\|EDU34578.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4196],... gi\|168768668, gi... - gi\|189362219\|gb\|EDU80638.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4486],... gi\|189372245, gi... - gi\|189372245\|gb\|EDU90661.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC869], ... gi\|168778541, gi... - gi\|189003261\|gb\|EDU72247.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4076],... gi\|170019153, gi... - gi\|170019153\|ref\|YP_001724107.1\| pyridoxine 5'-phosphate synthase [Escherichia coli ATCC 8739], gi\|1... gi\|189378686, gi... - gi\|189378686\|gb\|EDU97102.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC508], ... PDXJ_ECOLI - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) (PNP synthase) - Escherichia coli PDXJ_ECO57 - Pyridoxine 5'-phosphate synthase OS=Escherichia coli O157:H7 GN=pdxJ PE=3 SV=2 EG10693 - pyridoxine 5'-phosphate synthase / Pyridoxine 5'-phosphate (PNP) synthase; homo-octamer gi\|168748366, gi... - gi\|188017072\|gb\|EDU55194.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4113],... gi\|208814486, gi... - gi\|208814486\|ref\|ZP_03255815.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC40... gi\|208728720, gi... - gi\|208808919\|ref\|ZP_03251256.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC42... gi\|209157627, gi... - gi\|209396227\|ref\|YP_002272039.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC4... gi\|208739464, gi... - gi\|208819341\|ref\|ZP_03259661.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. EC40... gi\|15832684, gi\|... - gi\|15832684\|ref\|NP_311457.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. Sakai],... gi\|217326667, gi... - gi\|217326667\|ref\|ZP_03442750.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. TW14... gi\|89109370, gi\|... - gi\|89109370\|ref\|AP_003150.1\| pyridoxine 5'-phosphate synthase [Escherichia coli str. K-12 substr. W3... gi\|209920043, gi... - gi\|209920043\|ref\|YP_002294127.1\| pyridoxine 5'-phosphate synthase [Escherichia coli SE11], gi\|209913... gi\|157067723, gi... - gi\|75196582\|ref\|ZP_00706652.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli H... gi\|218361913, gi... - gi\|218555145\|ref\|YP_002388058.1\| pyridoxine 5'-phosphate synthase [Escherichia coli IAI1], gi\|218361... gi\|75187317, gi\|... - gi\|75187317\|ref\|ZP_00700584.1\| COG0854: Pyridoxal phosphate biosynthesis protein [Escherichia coli E... gi\|218547908, gi... - gi\|218547908\|ref\|YP_002381699.1\| pyridoxine 5'-phosphate synthase [Escherichia fergusonii ATCC 35469... gi\|188495429, gi... - gi\|188495429\|ref\|ZP_03002699.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli 5363... gi\|170082173, gi... - gi\|170082173\|ref\|YP_001731493.1\| pyridoxine 5'-phosphate synthase [Escherichia coli str. K-12 substr... gi\|193064042, gi... - gi\|193064042\|ref\|ZP_03045127.1\| pyridoxine 5'-phosphate synthase [Escherichia coli E22], gi\|19292927... EG10693 - pyridoxine 5'-phosphate synthase / Pyridoxine 5'-phosphate (PNP) synthase; homo-octamer gi\|191167992, gi... - gi\|191167992\|ref\|ZP_03029794.1\| pyridoxine 5'-phosphate synthase [Escherichia coli B7A], gi\|19090199... gi\|194429293, gi... - gi\|194429293\|ref\|ZP_03061820.1\| pyridoxine 5'-phosphate synthase [Escherichia coli B171], gi\|1944127... gi\|193068330, gi... - gi\|193068330\|ref\|ZP_03049293.1\| pyridoxine 5'-phosphate synthase [Escherichia coli E110019], gi\|1929... gi\|195936711 - gi\|195936711\|ref\|ZP_03082093.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli O157... gi\|194423419, gi... - gi\|194437613\|ref\|ZP_03069709.1\| pyridoxine 5'-phosphate synthase [Escherichia coli 101-1], gi\|194423... gi\|124499854, gi... - gi\|124529547\|ref\|ZP_01700517.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli B], ... gi\|218696192, gi... - gi\|218696192\|ref\|YP_002403859.1\| pyridoxine 5'-phosphate synthase [Escherichia coli 55989], gi\|21835... gi\|238863352, gi... - gi\|238901729\|ref\|YP_002927525.1\| pyridoxine 5'-phosphate synthase [Escherichia coli BW2952], gi\|2388... gi\|242378165, gi... - gi\|251785892\|ref\|YP_003000196.1\| hypothetical protein B21_02422 [Escherichia coli BL21], gi\|24237816... gi\|253978607, gi... - gi\|254289300\|ref\|YP_003055048.1\| pyridoxal phosphate biosynthetic protein [Escherichia coli BL21(DE3... gi\|254162539, gi... - gi\|254162539\|ref\|YP_003045647.1\| pyridoxal phosphate biosynthetic protein [Escherichia coli B str. R... gi\|254593914, gi... - gi\|254794514\|ref\|YP_003079351.1\| pyridoxine 5'-phosphate synthase [Escherichia coli O157:H7 str. TW1...	419.0	[0..6]	[248..1]
PDXJ_SHIBS - Pyridoxine 5'-phosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=pdxJ PE=3 SV=1 gi\|187430769, gi... - gi\|187733777\|ref\|YP_001881343.1\| pyridoxine 5'-phosphate synthase [Shigella boydii CDC 3083-94], gi\|...	419.0	[0..6]	[248..1]
gi\|56383692, gi\|... - gi\|56480141\|ref\|NP_708416.2\| pyridoxal phosphate biosynthetic protein PdxJ [Shigella flexneri 2a str... gi\|110806509, gi... - gi\|110806509\|ref\|YP_690029.1\| pyridoxal phosphate biosynthetic protein PdxJ [Shigella flexneri 5 str... gi\|194419587, gi... - gi\|194432058\|ref\|ZP_03064347.1\| pyridoxine 5'-phosphate synthase [Shigella dysenteriae 1012], gi\|194... gi\|30042222, gi\|... - gi\|30063966\|ref\|NP_838137.1\| pyridoxal phosphate biosynthetic protein PdxJ [Shigella flexneri 2a str...	418.0	[0..6]	[248..1]
gi\|15803090, gi\|... - gi\|15803090\|ref\|NP_289121.1\| pyridoxal phosphate biosynthetic protein PdxJ [Escherichia coli O157:H7... gi\|25345853 - gi\|25345853\|pir\|\|C85902 pyridoxine biosynthesis [imported] - Escherichia coli (strain O157:H7, subs...	417.0	[0..6]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRIVMAELL LGVNIDHIAT LRNARGTAYP DPVQAAFIAE QAGADGITVH LREDRRHITD  60
   61 RDVRILRQTL DTRMNLEMAV TEEMLAIAVE TKPHFCCLVP EKRQEVTTEG GLDVAGQREK 120
  121 IRDACKRLAD AGIQVSLFID ADEEQIKAAA EVGAPFIEIH TGCYADAKTD AEQAQELVRI 180
  181 AKAATFAASL GLKVNAGHGL TYHNVKAIAA IPEMHELNIG HAIIGRAVMT GLKDAVAEMK 240
  241 RLMLEARG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1m5wA
Description:	Pyridoxine 5'-phosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.52383794192252	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: