YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|192927859, gi...
Organism:	Escherichia coli E22
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|192927859, gi....

Description	E-value	Query Range	Subject Range
gi\|74311589, gi\|... - gi\|74311589\|ref\|YP_310008.1\| curli production assembly/transport component, 2nd curli operon [Shigel...	301.0	[0..1]	[277..1]
gi\|75195224, gi\|... - gi\|75195224\|ref\|ZP_00705294.1\| COG1462: Uncharacterized protein involved in formation of curli polym...	301.0	[0..1]	[277..1]
gi\|82776307, gi\|... - gi\|82776307\|ref\|YP_402656.1\| curli production assembly/transport component [Shigella dysenteriae Sd1...	299.0	[0..1]	[277..1]
gi\|167993993, gi... - gi\|205328046\|gb\|EDZ14810.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|205322413, gi... - gi\|205322413\|gb\|EDZ10252.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|161614647, gi... - gi\|161614647\|ref\|YP_001588612.1\| hypothetical protein SPAB_02397 [Salmonella enterica subsp. enteric... CSGG_SALTY - Curli production assembly/transport component csgG OS=Salmonella typhimurium GN=csgG PE=3 SV=1 gi\|198245567, gi... - gi\|198245567\|ref\|YP_002215999.1\| curli production assembly/transport component CsgG [Salmonella ente... gi\|197265222, gi... - gi\|197265222\|ref\|ZP_03165296.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|197214590, gi... - gi\|197250887\|ref\|YP_002146906.1\| curli production assembly/transport component CsgG [Salmonella ente... gi\|194735662, gi... - gi\|194735662\|ref\|YP_002114136.1\| curli production assembly/transport component CsgG [Salmonella ente... gi\|213420225 - gi\|213420225\|ref\|ZP_03353291.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|213162404 - gi\|213162404\|ref\|ZP_03348114.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|204930818, gi... - gi\|204930818\|ref\|ZP_03221691.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|200390361, gi... - gi\|200390361\|ref\|ZP_03216972.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|168467080, gi... - gi\|195630398\|gb\|EDX49024.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|205336432, gi... - gi\|205336432\|gb\|EDZ23196.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|168237214, gi... - gi\|197289847\|gb\|EDY29208.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|205331911, gi... - gi\|205331911\|gb\|EDZ18675.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|194472415, gi... - gi\|194472415\|ref\|ZP_03078399.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|194450998, gi... - gi\|194450998\|ref\|YP_002045137.1\| curli production assembly/transport component CsgG [Salmonella ente... gi\|194443410, gi... - gi\|194443410\|ref\|YP_002040392.1\| curli production assembly/transport component CsgG [Salmonella ente... gi\|205340987, gi... - gi\|205340987\|gb\|EDZ27751.1\| curli production assembly/transport component CsgG [Salmonella enterica ... gi\|238911041 - gi\|238911041\|ref\|ZP_04654878.1\| assembly/transport component in curli production [Salmonella enteric... CSGG_SALTY - Curli production assembly/transport component CsgG OS=Salmonella typhimurium GN=csgG PE=3 SV=1 gi\|213646857 - gi\|213646857\|ref\|ZP_03376910.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|213618649 - gi\|213618649\|ref\|ZP_03372475.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|213581807 - gi\|213581807\|ref\|ZP_03363633.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|213427740 - gi\|213427740\|ref\|ZP_03360490.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|224468883, gi... - gi\|224584356\|ref\|YP_002638154.1\| assembly/transport component in curli production [Salmonella enteri... gi\|214002383 - gi\|214002383\|ref\|ZP_03413118.1\| curli production assembly/transport component CsgG [Salmonella enter... gi\|213976274 - gi\|213976274\|ref\|ZP_03403533.1\| curli production assembly/transport component CsgG [Salmonella enter... CSGG_SALTI - Curli production assembly/transport component csgG OS=Salmonella typhi GN=csgG PE=3 SV=1 gi\|62179657, gi\|... - gi\|62179657\|ref\|YP_216074.1\| putative transcriptional regulator in curly assembly/transport, 2nd cur... gi\|29142213, gi\|... - gi\|29142213\|ref\|NP_805555.1\| assembly/transport component in curli production [Salmonella enterica s... gi\|56413872, gi\|... - gi\|56413872\|ref\|YP_150947.1\| assembly/transport component in curli production [Salmonella enterica s... gi\|16760016 - gi\|16760016\|ref\|NP_455633.1\| assembly/transport component in curli production [Salmonella enterica s... CSGG_SALTI - Curli production assembly/transport component CsgG OS=Salmonella typhi GN=csgG PE=3 SV=1 CSGG_SALTY - Curli production assembly/transport component CsgG OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... lcl\|NC_016856.1_... - [gene=csgG] [protein=putative curli operon transcriptional regulator] [protein_id=YP_005236887.1] [l...	279.0	[0..12]	[277..12]
gi\|95110899, gi\|... - gi\|95110899\|emb\|CAK15615.1\| Curli production assembly/transport component csgG precursor [Pseudomona... gi\|95110899 - gi\|95110899\|emb\|CAK15615.1\| Curli production assembly/transport component csgG precursor [Pseudomona...	274.0	[0..1]	[275..1]
gi\|59481113, gi\|... - gi\|59713012\|ref\|YP_205788.1\| curli production assembly/transport outer membrane lipoprotein componen... gi\|197317814, gi... - gi\|197336324\|ref\|YP_002157197.1\| curli production assembly/transport component CsgG [Vibrio fischeri...	272.0	[0..1]	[274..1]
gi\|24985125, gi\|... - gi\|26990184\|ref\|NP_745609.1\| curli production assembly/transport component CsgG [Pseudomonas putida ...	271.0	[0..1]	[275..1]
gi\|82717356, gi\|... - gi\|82735723\|ref\|ZP_00898585.1\| curli fiber membrane-associated lipoprotein CsgG [Pseudomonas putida ... tr\|I7B820\|I7B820... - Curli production assembly/transport component CsgG OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_162...	270.0	[0..1]	[275..1]
gi\|77458220, gi\|... - gi\|77458220\|ref\|YP_347725.1\| curli production assembly/transport component CsgG [Pseudomonas fluores...	265.0	[0..1]	[273..1]
gi\|127512658, gi... - gi\|78367375\|ref\|ZP_00837645.1\| Curli production assembly/transport component CsgG [Shewanella sp. PV...	251.0	[0..1]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLFLLVAV MLLSGCLTAP PKEAARPTLM PRAQSYKDLT HLPAPTGKIF VSVYNIQDET  60
   61 GQFKPYPASN FSTAVPQSAT AMLVTALKDS RWFIPLERQG LQNLLNERKI IRAAQENGTV 120
  121 AINNRIPLQS LTAANIMVEG SIIGYESNVK SGGVGARYFG IGADTQYQLD QIAVNLRVVN 180
  181 VSTGEILSSV NTSKTILSYE VQAGVFRFID YQRLLEGEVG YTSNEPVMLC LMSAIETGVI 240
  241 FLINDGIDRG LWDLQNKAER QNDILVKYRH MSVPPES

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.28
Match:	2iqiA
Description:	No description for 2iqiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits