YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85675639, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85675639, gi|....

Description	E-value	Query Range	Subject Range
gi\|187428534, gi... - gi\|75175493\|ref\|ZP_00695711.1\| hypothetical protein SboyB_01004445 [Shigella boydii BS512], gi\|18773... gi\|81246535, gi\|... - gi\|82545124\|ref\|YP_409071.1\| hypothetical protein SBO_2713 [Shigella boydii Sb227], gi\|81246535\|gb\|A...	195.0	[0..1]	[107..1]
gi\|218366604, gi... - gi\|218559835\|ref\|YP_002392748.1\| hypothetical protein ECS88_3118 [Escherichia coli S88], gi\|21836660... gi\|218428513, gi... - gi\|218690949\|ref\|YP_002399161.1\| hypothetical protein ECED1_3279 [Escherichia coli ED1a], gi\|2184285... gi\|26249252, gi\|... - gi\|26249252\|ref\|NP_755292.1\| hypothetical protein c3417 [Escherichia coli CFT073], gi\|26109659\|gb\|AA... gi\|117625076, gi... - gi\|117625076\|ref\|YP_854064.1\| hypothetical protein APECO1_3682 [Escherichia coli APEC O1], gi\|115514... gi\|215488141, gi... - gi\|215488141\|ref\|YP_002330572.1\| hypothetical protein E2348C_3092 [Escherichia coli O127:H6 str. E23... gi\|110344582, gi... - gi\|110642990\|ref\|YP_670720.1\| hypothetical protein ECP_2835 [Escherichia coli 536], gi\|110344582\|gb\|... gi\|226899556, gi... - gi\|237706516\|ref\|ZP_04536997.1\| prepilin peptidase dependent protein C [Escherichia sp. 3_2_53FAA], ... gi\|91212218, gi\|... - gi\|91212218\|ref\|YP_542204.1\| hypothetical protein UTI89_C3224 [Escherichia coli UTI89], gi\|91073792\|... gi\|227888386, gi... - gi\|227888386\|ref\|ZP_04006191.1\| prepilin peptidase-dependent protein C [Escherichia coli 83972], gi\|...	193.0	[0..1]	[107..1]
gi\|82778199, gi\|... - gi\|82778199\|ref\|YP_404548.1\| hypothetical protein SDY_3040 [Shigella dysenteriae Sd197], gi\|81242347...	192.0	[0..1]	[107..1]
gi\|75228187, gi\|... - gi\|75228187\|ref\|ZP_00714849.1\| hypothetical protein EcolB7_01003479 [Escherichia coli B7A], gi\|19116...	191.0	[0..1]	[107..1]
gi\|254594161, gi... - gi\|254794761\|ref\|YP_003079598.1\| hypothetical protein ECSP_3775 [Escherichia coli O157:H7 str. TW143... gi\|13363152, gi\|... - gi\|15832934\|ref\|NP_311707.1\| prepilin peptidase dependent protein C [Escherichia coli O157:H7], gi\|1... gi\|209761096, gi... - pir\|\|B85934 prepilin peptidase dependent protein C [imported] - Escherichia coli (strain O157:H7, su... gi\|208728246, gi... - gi\|208808445\|ref\|ZP_03250782.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|15803342, gi\|... - gi\|15803342\|ref\|NP_289375.1\| hypothetical protein Z4140 [Escherichia coli O157:H7 EDL933], gi\|125173... gi\|195936424 - gi\|195936424\|ref\|ZP_03081806.1\| hypothetical protein EscherichcoliO157_08162 [Escherichia coli O157:... gi\|189376211, gi... - gi\|189376211\|gb\|EDU94627.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|168788085, gi... - gi\|189372143\|gb\|EDU90559.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|217320017, gi... - gi\|217327650\|ref\|ZP_03443733.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|209396653, gi... - gi\|209396653\|ref\|YP_002272286.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 st... gi\|208820371, gi... - gi\|208820371\|ref\|ZP_03260691.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|208733853, gi... - gi\|208812576\|ref\|ZP_03253905.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|189354928, gi... - gi\|189354928\|gb\|EDU73347.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|13363152, gi\|... - gi\|15832934\|ref\|NP_311707.1\| hypothetical protein ECs3680 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168751037, gi... - gi\|188014856\|gb\|EDU52978.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|189003612, gi... - gi\|189003612\|gb\|EDU72598.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|168777656, gi... - gi\|187767143\|gb\|EDU30987.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|168766794, gi... - gi\|189363612\|gb\|EDU82031.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|189365396, gi... - gi\|189365396\|gb\|EDU83812.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC...	190.0	[0..1]	[107..1]
gi\|16766299, gi\|... - gi\|16766299\|ref\|NP_461914.1\| hypothetical protein STM2997 [Salmonella typhimurium LT2], gi\|16421546\|... gi\|56414944, gi\|... - gi\|56414944\|ref\|YP_152019.1\| hypothetical protein SPA2862 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ppdC] [protein=hypothetical protein] [protein_id=YP_005239117.1] [location=complement(3175908.... gi\|197095349, gi... - gi\|197363872\|ref\|YP_002143509.1\| hypothetical protein SSPA2665 [Salmonella enterica subsp. enterica ... gi\|199603671, gi... - gi\|200386573\|ref\|ZP_03213185.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. e... gi\|205328461, gi... - gi\|205328461\|gb\|EDZ15225.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. enter... gi\|168463848, gi... - gi\|195633170\|gb\|EDX51584.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. enter...	188.0	[0..1]	[106..1]
gi\|206710063, gi... - gi\|207858260\|ref\|YP_002244911.1\| hypothetical protein SEN2839 [Salmonella enterica subsp. enterica s... gi\|205273718, gi... - gi\|205353937\|ref\|YP_002227738.1\| hypothetical protein SG2905 [Salmonella enterica subsp. enterica se... gi\|197938434, gi... - gi\|198243918\|ref\|YP_002216969.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. ... gi\|197249404, gi... - gi\|197249404\|ref\|YP_002147905.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. ... gi\|168820278, gi... - gi\|205342798\|gb\|EDZ29562.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. enter... gi\|62129138, gi\|... - gi\|62181505\|ref\|YP_217922.1\| hypothetical protein SC2935 [Salmonella enterica subsp. enterica serova...	183.0	[0..1]	[106..1]
gi\|213646299 - gi\|213646299\|ref\|ZP_03376352.1\| hypothetical protein SentesTy_02490 [Salmonella enterica subsp. ente... gi\|213585480 - gi\|213585480\|ref\|ZP_03367306.1\| hypothetical protein SentesTyph_31150 [Salmonella enterica subsp. en... gi\|16761773 - gi\|16761773\|ref\|NP_457390.1\| hypothetical protein STY3135 [Salmonella enterica subsp. enterica serov... gi\|213428016 - gi\|213428016\|ref\|ZP_03360766.1\| hypothetical protein SentesTyphi_22010 [Salmonella enterica subsp. e... gi\|213162234 - gi\|213162234\|ref\|ZP_03347944.1\| hypothetical protein Salmoneentericaenterica_20453 [Salmonella enter... gi\|214000425 - gi\|214000425\|ref\|ZP_03411160.1\| hypothetical protein Salmonellentericaenterica_07231 [Salmonella ent... gi\|213852806 - gi\|213852806\|ref\|ZP_03382338.1\| hypothetical protein SentesT_08051 [Salmonella enterica subsp. enter... gi\|16504075, gi\|... - gi\|25302356\|pir\|\|AE0865 prepilin peptidase dependent protein C precursor [imported] - Salmonella ent... gi\|29138890, gi\|... - gi\|29143257\|ref\|NP_806599.1\| hypothetical protein t2905 [Salmonella enterica subsp. enterica serovar...	183.0	[0..1]	[106..1]
gi\|194415470, gi... - gi\|75212544\|ref\|ZP_00712568.1\| hypothetical protein EcolB_01000631 [Escherichia coli B171], gi\|19442... gi\|75187559, gi\|... - gi\|75187559\|ref\|ZP_00700826.1\| hypothetical protein EcolE_01000790 [Escherichia coli E24377A], gi\|15... gi\|74313391, gi\|... - gi\|74313391\|ref\|YP_311810.1\| hypothetical protein SSON_2980 [Shigella sonnei Ss046], gi\|73856868\|gb\|... gi\|188494012, gi... - gi\|75511963\|ref\|ZP_00734566.1\| hypothetical protein Ecol5_01003833 [Escherichia coli 53638], gi\|1884... gi\|75256825 - gi\|75256825\|ref\|ZP_00728419.1\| hypothetical protein EcolE2_01003245 [Escherichia coli E22] gi\|75215035, gi\|... - gi\|75215035\|ref\|ZP_00713495.1\| hypothetical protein EcolE1_01004337 [Escherichia coli E110019], gi\|1... gi\|218362140, gi... - gi\|218555372\|ref\|YP_002388285.1\| hypothetical protein ECIAI1_2931 [Escherichia coli IAI1], gi\|218362...	169.0	[0..1]	[107..1]
gi\|190908488, gi... - gi\|75241768\|ref\|ZP_00725587.1\| hypothetical protein EcolF_01001128 [Escherichia coli F11], gi\|191171...	167.0	[0..17]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASLKNQQG FSLPEVMLAM VLMVMIVTAL SGFQRTLMNS LASRNQYQQL WRHGWQQTQL  60
   61 RAISPPANWQ VNRMQTSQAG CVSISVTLVS PGGREGEMTR LHCPNRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.709	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.703	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.668	d.52.1	Alpha-lytic protease prodomain
View	Download	0.653	d.17.1	Cystatin/monellin
View	Download	0.565	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits