YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|192958872, gi...
Organism:	Escherichia coli E110019
Length:	322 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|192958872, gi....

Description	E-value	Query Range	Subject Range
gi\|75256215, gi\|... - gi\|75256215\|ref\|ZP_00727903.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli E22], gi\|...	400.0	[0..1]	[322..1]
gi\|194428927, gi... - gi\|75209859\|ref\|ZP_00710057.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli B171], gi... PSD_ECOHS - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O9:H4 (strain HS) GN=psd PE=3 SV=1	400.0	[0..1]	[322..1]
gi\|237703829, gi... - gi\|237703829\|ref\|ZP_04534310.1\| phosphatidylserine decarboxylase subunit proenzyme [Escherichia sp. ... PSD_ECOUT - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=psd PE=3 SV=... PSD_ECO45 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=psd PE...	399.0	[0..1]	[322..1]
gi\|26251055, gi\|... - gi\|26251055\|ref\|NP_757095.1\| phosphatidylserine decarboxylase [Escherichia coli CFT073], gi\|26111487...	399.0	[0..1]	[322..1]
PSD_SHIDS - Phosphatidylserine decarboxylase proenzyme OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=psd ...	398.0	[0..1]	[322..1]
PSD_SHISS - Phosphatidylserine decarboxylase proenzyme OS=Shigella sonnei (strain Ss046) GN=psd PE=3 SV=1	396.0	[0..1]	[322..1]
gi\|238910509 - gi\|238910509\|ref\|ZP_04654346.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... PSD_SALEP - Phosphatidylserine decarboxylase proenzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=psd PE=... PSD_SALG2 - Phosphatidylserine decarboxylase proenzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=... gi\|204926953, gi... - gi\|204926953\|ref\|ZP_03218155.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PSD_SALDC - Phosphatidylserine decarboxylase proenzyme OS=Salmonella dublin (strain CT_02021853) GN=psd PE=3 SV=... gi\|213428682 - gi\|213428682\|ref\|ZP_03361432.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... gi\|213052290 - gi\|213052290\|ref\|ZP_03345168.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1 PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A GN=psd PE=3 SV=1 lcl\|NC_016856.1_... - [gene=psd] [protein=phosphatidylserine decarboxylase] [protein_id=YP_005240663.1] [location=compleme... PSD_SALNS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella newport (strain SL254) GN=psd PE=3 SV=1 gi\|195630622, gi... - gi\|195630622\|gb\|EDX49234.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|205347968, gi... - gi\|205347968\|gb\|EDZ34599.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|205336305, gi... - gi\|205336305\|gb\|EDZ23069.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis (strain SC-B67) GN=psd PE=3 SV... PSD_SALPK - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain AKU_12601) GN=psd PE=3 ... PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=... gi\|197240792, gi... - gi\|197262537\|ref\|ZP_03162611.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALSV - Phosphatidylserine decarboxylase proenzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=psd PE=... PSD_SALHS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella heidelberg (strain SL476) GN=psd PE=3 SV=1 PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1 PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1 PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1 gi\|197289990, gi... - gi\|197289990\|gb\|EDY29349.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|167994768, gi... - gi\|205327414\|gb\|EDZ14178.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...	391.0	[0..1]	[320..1]
gi\|213608041 - gi\|213608041\|ref\|ZP_03368867.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... gi\|29140288, gi\|... - gi\|29144649\|ref\|NP_807991.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica s... PSD_SALTI - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhi GN=psd PE=3 SV=1 gi\|16763170 - gi\|16763170\|ref\|NP_458787.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica s... PSD_SALTI - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhi GN=psd PE=3 SV=1 gi\|213982193 - gi\|213982193\|ref\|ZP_03409452.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... gi\|213850083 - gi\|213850083\|ref\|ZP_03380981.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... gi\|214003370 - gi\|214003370\|ref\|ZP_03414105.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...	391.0	[0..1]	[320..1]
gi\|84378255, gi\|... - gi\|84386965\|ref\|ZP_00989989.1\| phosphatidylserine decarboxylase [Vibrio splendidus 12B01], gi\|843782...	371.0	[0..2]	[314..1]
gi\|218708315, gi... - gi\|218708315\|ref\|YP_002415936.1\| phosphatidylserine decarboxylase [Vibrio splendidus LGP32], gi\|2183... gi\|85834928, gi\|... - gi\|86147213\|ref\|ZP_01065528.1\| phosphatidylserine decarboxylase [Vibrio sp. MED222], gi\|85834928\|gb\|...	362.0	[0..2]	[295..1]

Back

Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSFKLSLQ YILPKLWLTR LAGWGASKRA GWLTKLVIDL FVKYYKVDMK EAQKPDTASY  60
   61 RTFNEFFVRP LRDE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRPIDTDPNV LVMPADGVIS QLGKIEEDKI LQAKGHNYSL EALLAGNYLM ADLFRNGTFV  60
   61 TTYLSPRDYH RVHMPCNGIL REMIYVPGDL FSVNHLTAQN VPNLFARNER VICLFDTEFG 120
  121 PMAQILVGAT IVGSIETVWA GTITPPREGI IKRWTWPAGE NDGSVALLKG QEMGRFKLGS 180
  181 TVINLFAPGK VNLVEQLESL SVTKIGQPLA VSTETFVTPD AEPAPLPAEE IEAEHDASPL 240
  241 VDDKKDQV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: