YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPZ_ECOLI
Organism:	Escherichia coli
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|45443758, gi\|... - gi\|45443758\|ref\|NP_995297.1\| ATP synthase subunit I [Yersinia pestis biovar Microtus str. 91001], gi...	111.0	[0..1]	[123..23]
gi\|21961158, gi\|... - gi\|22128010\|ref\|NP_671433.1\| ATP synthase subunit I [Yersinia pestis KIM], gi\|21961158\|gb\|AAM87684.1...	110.0	[0..1]	[123..23]
gi\|78064758, gi\|... - gi\|78064758\|ref\|YP_367527.1\| F0F1-type ATP synthase subunit I-like [Burkholderia sp. 383], gi\|779655...	108.0	[0..3]	[121..57]
gi\|146295043, gi... - gi\|146295043\|ref\|YP_001185467.1\| ATP synthase I chain [Shewanella putrefaciens CN-32], gi\|145566733\|... gi\|82720126, gi\|... - gi\|82742508\|ref\|ZP_00905198.1\| ATP synthase protein I [Shewanella sp. W3-18-1], gi\|82720126\|gb\|EAP55... gi\|124508984, gi... - gi\|124547720\|ref\|ZP_01706566.1\| ATP synthase I chain [Shewanella putrefaciens 200], gi\|124508984\|gb\|...	108.0	[0..3]	[124..29]
gi\|91785740, gi\|... - gi\|91785740\|ref\|YP_560946.1\| putative ATP synthase protein I [Burkholderia xenovorans LB400], gi\|916...	107.0	[0..3]	[121..63]
gi\|67662194, gi\|... - gi\|67662194\|ref\|ZP_00459484.1\| putative ATP synthase protein I [Burkholderia cenocepacia HI2424], gi... gi\|67094895, gi\|... - gi\|67657481\|ref\|ZP_00454859.1\| putative ATP synthase protein I AtpI [Burkholderia cenocepacia AU 105...	106.0	[0..3]	[121..57]
gi\|118711545, gi... - gi\|170731470\|ref\|YP_001763417.1\| F0F1-type ATP synthase subunit I-like protein [Burkholderia cenocep... gi\|254246691, gi... - gi\|84356400\|ref\|ZP_00981248.1\| COG3312: F0F1-type ATP synthase, subunit I [Burkholderia cenocepacia ...	106.0	[0..3]	[121..57]
gi\|52843182, gi\|... - gi\|52843182\|ref\|YP_096981.1\| ATP synthase protein I [Legionella pneumophila subsp. pneumophila str. ...	104.0	[0..13]	[125..12]
gi\|54298993, gi\|... - gi\|54298993\|ref\|YP_125362.1\| hypothetical protein lpp3060 [Legionella pneumophila str. Paris], gi\|53... gi\|54295827, gi\|... - gi\|54295827\|ref\|YP_128242.1\| hypothetical protein lpl2917 [Legionella pneumophila str. Lens], gi\|537... gi\|148361329, gi... - gi\|148361329\|ref\|YP_001252536.1\| ATP synthase protein I [Legionella pneumophila str. Corby], gi\|1482...	104.0	[0..13]	[125..12]
gi\|67531829, gi\|... - gi\|67546930\|ref\|ZP_00424839.1\| putative ATP synthase protein I AtpI [Burkholderia vietnamiensis G4],...	103.0	[0..3]	[121..58]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLVSRNV ARKLLLVQLL VVIASGLLFS LKDPFWGVSA ISGGLAVFLP NVLFMIFAWR  60
   61 HQAHTPAKGR VAWTFAFGEA FKVLAMLVLL VVALAVLKAV FLPLIVTWVL VLVVQILAPA 120
  121 VINNKG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.677781
Match:	PF03899.6
Description:	No description for PF03899.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits