YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|187731270, gi...
Organism:	Shigella boydii CDC 3083-94
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187731270, gi....

Description	E-value	Query Range	Subject Range
gi\|194430997, gi... - gi\|83571679\|ref\|ZP_00923119.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec...	147.0	[0..1]	[133..1]
gi\|237703128, gi... - gi\|237703128\|ref\|ZP_04533609.1\| hsp15-like protein [Escherichia sp. 3_2_53FAA], gi\|226902392\|gb\|EEH8... EG12929 - ribosome-associated heat shock protein Hsp15 / Hsp15, a heat shock protein that binds free 50S subun... gi\|227839410, gi... - gi\|227883531\|ref\|ZP_04001336.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli 83972... gi\|188018268, gi... - gi\|188018268\|gb\|EDU56390.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4113], gi\|1687471... gi\|189359003, gi... - gi\|189359003\|gb\|EDU77422.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4401], gi\|1687531... gi\|189369521, gi... - gi\|189369521\|gb\|EDU87937.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4501], gi\|1687594... gi\|168765745, gi... - gi\|189364400\|gb\|EDU82819.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4486], gi\|1687657... gi\|187771450, gi... - gi\|187771450\|gb\|EDU35294.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4196], gi\|1687727... HSLR_ECO57 - Heat shock protein 15 OS=Escherichia coli O157:H7 GN=hslR PE=3 SV=1 HSLR_ECOL6 - Heat shock protein 15 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hslR PE=3 SV... gi\|12518026, gi\|... - gi\|15803903\|ref\|NP_289939.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli O157:H7 ... EG12929 - ribosome-associated heat shock protein Hsp15 / Hsp15, a heat shock protein that binds free 50S subun... gi\|74313904, gi\|... - gi\|74313904\|ref\|YP_312323.1\| ribosome-associated heat shock protein Hsp15 [Shigella sonnei Ss046], g... gi\|208814461, gi... - gi\|208814461\|ref\|ZP_03255790.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|82778785, gi\|... - gi\|82778785\|ref\|YP_405134.1\| ribosome-associated heat shock protein Hsp15 [Shigella dysenteriae Sd19... gi\|208738635, gi... - gi\|208818512\|ref\|ZP_03258832.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|191171483, gi... - gi\|75241510\|ref\|ZP_00725355.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|115514791, gi... - gi\|117625667\|ref\|YP_858990.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli APEC O1... gi\|209159139, gi... - gi\|209397739\|ref\|YP_002272834.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|188495300, gi... - gi\|75516132\|ref\|ZP_00738250.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|124528173, gi... - gi\|124528173\|ref\|ZP_01699506.1\| RNA-binding S4 domain protein [Escherichia coli B], gi\|124500828\|gb\|... gi\|215488680, gi... - gi\|215488680\|ref\|YP_002331111.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli O127... gi\|217321568, gi... - gi\|217325347\|ref\|ZP_03441431.1\| heat shock protein 15 [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|218367226, gi... - gi\|218560457\|ref\|YP_002393370.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli S88]... HSLR_ECOLI - Heat shock protein 15 (HSP15) - Escherichia coli gi\|89110610, gi\|... - gi\|89110610\|ref\|AP_004390.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli str. K-1... gi\|218429240, gi... - gi\|218691676\|ref\|YP_002399888.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli ED1a... gi\|218353812, gi... - gi\|218697080\|ref\|YP_002404747.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli 5598... gi\|189002579, gi... - gi\|189002579\|gb\|EDU71565.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4076], gi\|1687794... gi\|189374483, gi... - gi\|189374483\|gb\|EDU92899.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC869], gi\|16878520... gi\|168797168, gi... - gi\|189379965\|gb\|EDU98381.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC508], gi\|16879716... gi\|169753292, gi... - gi\|170018364\|ref\|YP_001723318.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli ATCC... gi\|83588735, gi\|... - gi\|83588735\|ref\|ZP_00927359.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|169890752, gi... - gi\|170082917\|ref\|YP_001732237.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli str.... gi\|75197331, gi\|... - gi\|75197331\|ref\|ZP_00707401.1\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|170518569, gi... - gi\|170680851\|ref\|YP_001745645.1\| heat shock protein 15 [Escherichia coli SMS-3-5], gi\|170518569\|gb\|A... gi\|195934888 - gi\|195934888\|ref\|ZP_03080270.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli O157:... gi\|208808525, gi... - gi\|208808525\|ref\|ZP_03250862.1\| heat shock protein 15 [Escherichia coli O157:H7 str. EC4206], gi\|208... HSLR_ECOL6 - Heat shock protein 15 OS=Escherichia coli O6 GN=hslR PE=2 SV=1 gi\|91212872, gi\|... - gi\|91212872\|ref\|YP_542858.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli UTI89], ... gi\|218702143, gi... - gi\|218702143\|ref\|YP_002409772.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli IAI3... gi\|218706990, gi... - gi\|218706990\|ref\|YP_002414509.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli UMN0... gi\|13363716, gi\|... - gi\|15833496\|ref\|NP_312269.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli O157:H7 ... gi\|254594714, gi... - gi\|254795314\|ref\|YP_003080151.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli O157... gi\|110345225, gi... - gi\|110643633\|ref\|YP_671363.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli 536], g... gi\|226839072, gi... - gi\|254038566\|ref\|ZP_04872622.1\| heat shock protein 15 [Escherichia sp. 1_1_43], gi\|226839072\|gb\|EEH7... gi\|253322816, gi... - gi\|253771772\|ref\|YP_003034603.1\| RNA-binding S4 domain protein [Escherichia coli BL21(DE3)], gi\|2533... gi\|238863490, gi... - gi\|238902491\|ref\|YP_002928287.1\| ribosome-associated heat shock protein Hsp15 [Escherichia coli BW29...	146.0	[0..1]	[133..1]
gi\|110616780, gi... - gi\|110807232\|ref\|YP_690752.1\| ribosome-associated heat shock protein Hsp15 [Shigella flexneri 5 str....	145.0	[0..1]	[133..1]
gi\|15603411, gi\|... - gi\|15603411\|ref\|NP_246485.1\| hypothetical protein PM1546 [Pasteurella multocida subsp. multocida str...	145.0	[0..4]	[132..9]
gi\|197364342, gi... - gi\|197364342\|ref\|YP_002143979.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica s... gi\|197248596, gi... - gi\|197248596\|ref\|YP_002148418.1\| heat shock protein 15 [Salmonella enterica subsp. enterica serovar ... gi\|238910497 - gi\|238910497\|ref\|ZP_04654334.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|56415412, gi\|... - gi\|56415412\|ref\|YP_152487.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica subsp...	145.0	[0..1]	[133..1]
gi\|205330766, gi... - gi\|205330766\|gb\|EDZ17530.1\| heat shock protein 15 [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|205338752, gi... - gi\|205338752\|gb\|EDZ25516.1\| heat shock protein 15 [Salmonella enterica subsp. enterica serovar Heide... gi\|16766785, gi\|... - gi\|16766785\|ref\|NP_462400.1\| ribosome-associated heat shock protein Hsp15 [Salmonella typhimurium LT... lcl\|NC_016856.1_... - [gene=yrfH] [protein=ribosome-associated heat shock protein Hsp15] [protein_id=YP_005239696.1] [loca... gi\|197263921, gi... - gi\|197263921\|ref\|ZP_03163995.1\| heat shock protein 15 [Salmonella enterica subsp. enterica serovar S... gi\|197939836, gi... - gi\|198245320\|ref\|YP_002217456.1\| heat shock protein 15 [Salmonella enterica subsp. enterica serovar ... gi\|168260781, gi... - gi\|205350473\|gb\|EDZ37104.1\| heat shock protein 15 [Salmonella enterica subsp. enterica serovar Hadar... gi\|194406207, gi... - gi\|194447903\|ref\|YP_002047520.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica s...	144.0	[0..1]	[133..1]
gi\|213612457 - gi\|213612457\|ref\|ZP_03370283.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|213646570 - gi\|213646570\|ref\|ZP_03376623.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|213857749 - gi\|213857749\|ref\|ZP_03384720.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|214000234 - gi\|214000234\|ref\|ZP_03410969.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|213029349 - gi\|213029349\|ref\|ZP_03343796.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|213051731 - gi\|213051731\|ref\|ZP_03344609.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|213418651 - gi\|213418651\|ref\|ZP_03351717.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|213580171 - gi\|213580171\|ref\|ZP_03361997.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica su... gi\|29144277, gi\|... - gi\|29144277\|ref\|NP_807619.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica subsp... gi\|16762790 - gi\|16762790\|ref\|NP_458407.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica subsp... gi\|25351601, gi\|... - gi\|25351601\|pir\|\|AI0998 heat shock protein [imported] - Salmonella enterica subsp. enterica serovar ...	144.0	[0..1]	[133..1]
gi\|62129632, gi\|... - gi\|62181999\|ref\|YP_218416.1\| ribosome-associated heat shock protein Hsp15 [Salmonella enterica subsp...	143.0	[0..1]	[133..1]
gi\|53728946 - gi\|53728946\|ref\|ZP_00134384.2\| COG1188: Ribosome-associated heat shock protein implicated in the rec... gi\|126208778, gi... - gi\|126208778\|ref\|YP_001054003.1\| heat shock-like protein 15 [Actinobacillus pleuropneumoniae L20], g... gi\|165876835, gi... - gi\|165976734\|ref\|YP_001652327.1\| heat shock protein 15-like protein [Actinobacillus pleuropneumoniae... gi\|190150634, gi... - gi\|190150634\|ref\|YP_001969159.1\| heat shock-like protein 15 [Actinobacillus pleuropneumoniae serovar...	140.0	[0..2]	[130..4]
gi\|50123024, gi\|... - gi\|50123024\|ref\|YP_052191.1\| heat shock protein [Pectobacterium atrosepticum SCRI1043], gi\|49613550\|...	136.0	[0..2]	[133..5]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKPAVEVR LDKWLWAARF YKTRALAREM IEGGKVHYNG QRSKPSKIVE LNATLTLRQG  60
   61 NDERTVIVKA ITEQRRPASE AALLYEETAE SVEKREKMAM ARKLNALTMP HPDRRPDKKE 120
  121 RRDLLRFKHG DSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1dm9A
Description:	Heat shock protein 15 kD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	0.15378395634409	bayes_pls_golite062009
structural molecule activity	0.145410712452618	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: