YRC Public Data Repository - Protein Structure Prediction

Protein:	YFCN_SHIB3
Organism:	Shigella boydii CDC 3083-94
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFCN_SHIB3.

Description	E-value	Query Range	Subject Range
gi\|13362685, gi\|... - gi\|15832469\|ref\|NP_311242.1\| hypothetical protein ECs3214 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188017223, gi... - gi\|188017223\|gb\|EDU55345.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168748187\|... gi\|209764684, gi... - pir\|\|G91030 hypothetical protein ECs3214 [imported] - Escherichia coli (strain O157:H7, substrain R... YFCN_ECO5E - UPF0115 protein YfcN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfcN PE=3 SV=1 gi\|208818629, gi... - gi\|208818629\|ref\|ZP_03258949.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4042], gi\|208738... gi\|208811878, gi... - gi\|208811878\|ref\|ZP_03253207.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4045], gi\|208733... gi\|208725626, gi... - gi\|208805825\|ref\|ZP_03248162.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4206], gi\|208725... YFCN_ECO57 - UPF0115 protein YfcN OS=Escherichia coli O157:H7 GN=yfcN PE=3 SV=1 gi\|217326950, gi... - gi\|217326950\|ref\|ZP_03443033.1\| Smr domain protein [Escherichia coli O157:H7 str. TW14588], gi\|21731... gi\|254593624, gi... - gi\|254794224\|ref\|YP_003079061.1\| hypothetical protein ECSP_3206 [Escherichia coli O157:H7 str. TW143... gi\|168772936, gi... - gi\|187771017\|gb\|EDU34861.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168772936\|... gi\|189363015, gi... - gi\|189363015\|gb\|EDU81434.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767964\|... gi\|168761224, gi... - gi\|189368226\|gb\|EDU86642.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168761224\|... gi\|168755090, gi... - gi\|189357716\|gb\|EDU76135.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168755090\|... gi\|195935711 - gi\|195935711\|ref\|ZP_03081093.1\| hypothetical protein EscherichcoliO157_04492 [Escherichia coli O157:... gi\|168798508, gi... - gi\|189378953\|gb\|EDU97369.1\| Smr domain protein [Escherichia coli O157:H7 str. EC508], gi\|168798508\|r... gi\|168787245, gi... - gi\|189372965\|gb\|EDU91381.1\| Smr domain protein [Escherichia coli O157:H7 str. EC869], gi\|168787245\|r... gi\|168780194, gi... - gi\|189001908\|gb\|EDU70894.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168780194\|...	210.0	[0..1]	[183..1]
YFCN_SHIDS - UPF0115 protein YfcN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yfcN PE=3 SV=1	210.0	[0..1]	[183..1]
YFCN_SHISS - UPF0115 protein YfcN OS=Shigella sonnei (strain Ss046) GN=yfcN PE=3 SV=1	209.0	[0..1]	[183..1]
YFCN_SALPB - UPF0115 protein YfcN OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfcN PE=3 SV=1 YFCN_SALTY - UPF0115 protein yfcN OS=Salmonella typhimurium GN=yfcN PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yfcN] [protein=hypothetical protein] [protein_id=YP_005238470.1] [location=2548312..2548863] YFCN_SALNS - UPF0115 protein YfcN OS=Salmonella newport (strain SL254) GN=yfcN PE=3 SV=1 gi\|205349467, gi... - gi\|205349467\|gb\|EDZ36098.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Hadar st... gi\|194457670, gi... - gi\|194471306\|ref\|ZP_03077290.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Kent... YFCN_SALHS - UPF0115 protein YfcN OS=Salmonella heidelberg (strain SL476) GN=yfcN PE=3 SV=1 gi\|205335775, gi... - gi\|205335775\|gb\|EDZ22539.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Kentucky... gi\|205328808, gi... - gi\|205328808\|gb\|EDZ15572.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|168242512, gi... - gi\|205338530\|gb\|EDZ25294.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|197289649, gi... - gi\|197289649\|gb\|EDY29012.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Schwarze... YFCN_SALPB - UPF0115 protein yfcN OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfcN PE=3 SV=1 YFCN_SALTI - UPF0115 protein YfcN OS=Salmonella typhi GN=yfcN PE=3 SV=1 gi\|167549606, gi... - gi\|205325162\|gb\|EDZ13001.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Saintpau... gi\|16761310 - gi\|16761310\|ref\|NP_456927.1\| hypothetical protein STY2618 [Salmonella enterica subsp. enterica serov... YFCN_SALTY - UPF0115 protein YfcN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfcN PE=3 SV... gi\|238912335 - gi\|238912335\|ref\|ZP_04656172.1\| hypothetical protein SentesTe_14546 [Salmonella enterica subsp. ente... gi\|29136619, gi\|... - gi\|29140994\|ref\|NP_804336.1\| hypothetical protein t0478 [Salmonella enterica subsp. enterica serovar... gi\|213426188 - gi\|213426188\|ref\|ZP_03358938.1\| hypothetical protein SentesTyphi_11459 [Salmonella enterica subsp. e... gi\|213160945 - gi\|213160945\|ref\|ZP_03346655.1\| hypothetical protein Salmoneentericaenterica_13203 [Salmonella enter... YFCN_SALTY - UPF0115 protein yfcN OS=Salmonella typhimurium GN=yfcN PE=3 SV=1 YFCN_SALPC - UPF0115 protein YfcN OS=Salmonella paratyphi C (strain RKS4594) GN=yfcN PE=3 SV=1 YFCN_SALTI - UPF0115 protein yfcN OS=Salmonella typhi GN=yfcN PE=3 SV=1 gi\|213582767 - gi\|213582767\|ref\|ZP_03364593.1\| hypothetical protein SentesTyph_16798 [Salmonella enterica subsp. en... gi\|204929171, gi... - gi\|204929171\|ref\|ZP_03220314.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Javi... gi\|199603881, gi... - gi\|200386783\|ref\|ZP_03213395.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Virc... YFCN_SALEP - UPF0115 protein YfcN OS=Salmonella enteritidis PT4 (strain P125109) GN=yfcN PE=3 SV=1 YFCN_SALG2 - UPF0115 protein YfcN OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfcN PE=3 SV=1 YFCN_SALA4 - UPF0115 protein YfcN OS=Salmonella agona (strain SL483) GN=yfcN PE=3 SV=1 YFCN_SALSV - UPF0115 protein YfcN OS=Salmonella schwarzengrund (strain CVM19633) GN=yfcN PE=3 SV=1 YFCN_SALDC - UPF0115 protein YfcN OS=Salmonella dublin (strain CT_02021853) GN=yfcN PE=3 SV=1 gi\|197243062, gi... - gi\|197264807\|ref\|ZP_03164881.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Sain...	209.0	[0..1]	[183..1]
gi\|253974241, gi... - gi\|254162340\|ref\|YP_003045448.1\| hypothetical protein ECB_02256 [Escherichia coli B str. REL606], gi... gi\|253978408, gi... - gi\|254289101\|ref\|YP_003054849.1\| hypothetical protein ECD_02256 [Escherichia coli BL21(DE3)], gi\|253... YFCN_ECOSM - UPF0115 protein YfcN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfcN PE=3 SV=1 YFCN_ECOLU - UPF0115 protein YfcN OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfcN PE=3 SV=1 YFCN_ECOL5 - UPF0115 protein YfcN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfcN PE=3 SV=1 gi\|75243142 - gi\|75243142\|ref\|ZP_00726848.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194424990, gi... - gi\|83588355\|ref\|ZP_00926980.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|251785691, gi... - gi\|251785691\|ref\|YP_002999995.1\| hypothetical protein B21_02216 [Escherichia coli BL21], gi\|24237796...	209.0	[0..1]	[183..1]
gi\|188494034, gi... - gi\|75515696\|ref\|ZP_00737831.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c...	209.0	[0..1]	[183..1]
gi\|25355657 - gi\|25355657\|pir\|\|H85874 hypothetical protein Z3594 [imported] - Escherichia coli (strain O157:H7, s... gi\|15802878, gi\|... - gi\|15802878\|ref\|NP_288905.1\| hypothetical protein Z3594 [Escherichia coli O157:H7 EDL933], gi\|125166...	208.0	[0..1]	[183..1]
YFCN_SALPK - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain AKU_12601) GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein yfcN OS=Salmonella paratyphi A GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfcN PE=3 SV=1	208.0	[0..1]	[183..1]
gi\|145210985, gi... - gi\|145599289\|ref\|YP_001163365.1\| hypothetical protein YPDSF_2011 [Yersinia pestis Pestoides F], gi\|1... Q668V3\|Q668V3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|77635296 - gi\|77635296\|ref\|ZP_00797382.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|51596953, gi\|... - gi\|51596953\|ref\|YP_071144.1\| hypothetical protein YPTB2634 [Yersinia pseudotuberculosis IP 32953], g... gi\|45437067, gi\|... - gi\|45442203\|ref\|NP_993742.1\| hypothetical protein YP_2414 [Yersinia pestis biovar Microtus str. 9100... gi\|21958372, gi\|... - gi\|22125478\|ref\|NP_668901.1\| hypothetical protein y1583 [Yersinia pestis KIM], gi\|21958372\|gb\|AAM851... gi\|165992527, gi... - gi\|166008145\|ref\|ZP_02229043.1\| Smr domain protein [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|166204561, gi... - gi\|166214205\|ref\|ZP_02240240.1\| Smr domain protein [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|167052195, gi... - gi\|167399691\|ref\|ZP_02305215.1\| Smr domain protein [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|167421342, gi... - gi\|167421342\|ref\|ZP_02313095.1\| Smr domain protein [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|167424566, gi... - gi\|167424566\|ref\|ZP_02316319.1\| Smr domain protein [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|167469288 - gi\|167469288\|ref\|ZP_02333992.1\| hypothetical protein YpesF_15679 [Yersinia pestis FV-1] gi\|169750287, gi... - gi\|170023753\|ref\|YP_001720258.1\| hypothetical protein YPK_1512 [Yersinia pseudotuberculosis YPIII], ... gi\|186896034, gi... - gi\|186896034\|ref\|YP_001873146.1\| hypothetical protein YPTS_2729 [Yersinia pseudotuberculosis PB1/+],... gi\|117673091, gi... - gi\|77629682\|ref\|ZP_00792268.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|165937023, gi... - gi\|89103114\|ref\|ZP_01175706.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108808089, gi... - gi\|108808089\|ref\|YP_652005.1\| hypothetical protein YPA_2094 [Yersinia pestis Antiqua], gi\|108780002\|... gi\|108776007, gi... - gi\|108812359\|ref\|YP_648126.1\| hypothetical protein YPN_2197 [Yersinia pestis Nepal516], gi\|108776007... gi\|165925386, gi... - gi\|165925386\|ref\|ZP_02221218.1\| Smr domain protein [Yersinia pestis biovar Orientalis str. F1991016]...	201.0	[0..1]	[167..28]
gi\|77975542, gi\|... - gi\|77975542\|ref\|ZP_00831077.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia fred...	199.0	[0..1]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTTLSEE DQALFRQLMA GTRKIKQDTI VHRPQRKKIS EVPVKRLIQE QADASHYFSD  60
   61 EFQPLLNTEG PVKYVRPDVS HFEAKKLRRG DY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.335	a.118.8	TPR-like
View	Download	0.333	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.304	a.101.1	Uteroglobin-like
View	Download	0.274	a.4.2	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
View	Download	0.233	a.28.1	ACP-like

Predicted Domain #2

Region A:
Residues: [93-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPELFLDLHG LTQLQAKQEL GALIAACRRE HVFCACVMHG HGKHILKQQT PLWLAQHPHV  60
   61 MAFHQAPKEY GGDAALLVLI EVEEWLPPEL P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	2d9iA
Description:	No description for 2d9iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits