YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|191172388, gi...
Organism:	Escherichia coli F11
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|191172388, gi....

Description	E-value	Query Range	Subject Range
gi\|29137819, gi\|... - gi\|29142189\|ref\|NP_805531.1\| hypothetical protein t1756 [Salmonella enterica subsp. enterica serovar... gi\|16760040 - gi\|16760040\|ref\|NP_455657.1\| hypothetical protein STY1202 [Salmonella enterica subsp. enterica serov... gi\|25302217, gi\|... - gi\|25302217\|pir\|\|AE0638 conserved hypothetical protein STY1202 [imported] - Salmonella enterica subs... gi\|213609762 - gi\|213609762\|ref\|ZP_03369588.1\| hypothetical protein SentesTyp_04235 [Salmonella enterica subsp. ent... gi\|213580770 - gi\|213580770\|ref\|ZP_03362596.1\| hypothetical protein SentesTyph_05962 [Salmonella enterica subsp. en... gi\|213053068 - gi\|213053068\|ref\|ZP_03345946.1\| hypothetical protein Salmoneentericaenterica_09195 [Salmonella enter... gi\|213979860 - gi\|213979860\|ref\|ZP_03407119.1\| hypothetical protein Salmonellaentericaenterica_37368 [Salmonella en... gi\|213864907 - gi\|213864907\|ref\|ZP_03387026.1\| hypothetical protein SentesT_34084 [Salmonella enterica subsp. enter... gi\|213648913 - gi\|213648913\|ref\|ZP_03378966.1\| hypothetical protein SentesTy_17518 [Salmonella enterica subsp. ente...	234.0	[0..3]	[186..25]
gi\|26107604, gi\|... - gi\|26247203\|ref\|NP_753243.1\| hypothetical protein c1330 [Escherichia coli CFT073], gi\|26107604\|gb\|AA... gi\|227836783, gi... - gi\|227886579\|ref\|ZP_04004384.1\| possible lipoprotein [Escherichia coli 83972], gi\|227836783\|gb\|EEJ47...	234.0	[0..1]	[186..20]
gi\|115512373, gi... - gi\|117623249\|ref\|YP_852162.1\| hypothetical protein APECO1_145 [Escherichia coli APEC O1], gi\|1155123... gi\|237706951, gi... - gi\|237706951\|ref\|ZP_04537432.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|110614629, gi... - gi\|110805081\|ref\|YP_688601.1\| hypothetical protein SFV_1085 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91071789, gi\|... - gi\|91210215\|ref\|YP_540201.1\| hypothetical protein UTI89_C1188 [Escherichia coli UTI89], gi\|91071789\|... gi\|24112474, gi\|... - ref\|NP_706984.1\| hypothetical protein SF1069 [Shigella flexneri 2a str. 301], gb\|AAN42691.1\| orf, c...	234.0	[0..1]	[186..20]
gi\|197247854, gi... - gi\|197247854\|ref\|YP_002146879.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar A... YCEB_SALTY - Uncharacterized lipoprotein yceB OS=Salmonella typhimurium GN=yceB PE=4 SV=2 gi\|197242815, gi... - gi\|197264560\|ref\|ZP_03164634.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|197940750, gi... - gi\|198246234\|ref\|YP_002215973.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar D... gi\|207857328, gi... - gi\|207857328\|ref\|YP_002243979.1\| hypothetical protein SEN1884 [Salmonella enterica subsp. enterica s... gi\|197289763, gi... - gi\|197289763\|gb\|EDY29124.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Schwar... gi\|195630443, gi... - gi\|195630443\|gb\|EDX49069.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Newpor... gi\|194443270, gi... - gi\|194443270\|ref\|YP_002040418.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar N... gi\|62127315, gi\|... - gi\|62179682\|ref\|YP_216099.1\| hypothetical protein SC1112 [Salmonella enterica subsp. enterica serova... gi\|194734955, gi... - gi\|194734955\|ref\|YP_002114163.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar S... gi\|161614616, gi... - gi\|161614616\|ref\|YP_001588581.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|205328033, gi... - gi\|205328033\|gb\|EDZ14797.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar 4,[5],... YCEB_SALTY - Uncharacterized lipoprotein yceB OS=Salmonella typhimurium GN=yceB PE=4 SV=2 gi\|224468859, gi... - gi\|224584332\|ref\|YP_002638130.1\| putative outer membrane lipoprotein [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=yceB] [protein=hypothetical protein] [protein_id=YP_005236917.1] [location=complement(1207828.... YCEB_SALTY - Uncharacterized lipoprotein YceB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=...	234.0	[0..1]	[186..1]
gi\|21959122, gi\|... - gi\|22126159\|ref\|NP_669582.1\| hypothetical protein y2273 [Yersinia pestis KIM], gi\|21959122\|gb\|AAM858... gi\|45436547, gi\|... - gi\|45441685\|ref\|NP_993224.1\| hypothetical protein YP_1882 [Yersinia pestis biovar Microtus str. 9100...	233.0	[0..1]	[186..11]
gi\|238715873, gi... - gi\|77959368\|ref\|ZP_00823388.1\| hypothetical protein YberA_01000330 [Yersinia bercovieri ATCC 43970],...	232.0	[0..1]	[186..1]
gi\|208815069, gi... - gi\|208815069\|ref\|ZP_03256248.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208822692, gi... - gi\|208822692\|ref\|ZP_03263011.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|209160652, gi... - gi\|209399252\|ref\|YP_002269909.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|168789998, gi... - gi\|189370492\|gb\|EDU88908.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168789998... gi\|189375927, gi... - gi\|189375927\|gb\|EDU94343.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168802008... gi\|195935452 - gi\|195935452\|ref\|ZP_03080834.1\| hypothetical protein EscherichcoliO157_03177 [Escherichia coli O157:... gi\|208728607, gi... - gi\|208808806\|ref\|ZP_03251143.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|189365522, gi... - gi\|189365522\|gb\|EDU83938.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876447... gi\|168767722, gi... - gi\|189363287\|gb\|EDU81706.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876772... gi\|187770449, gi... - gi\|187770449\|gb\|EDU34293.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877390... gi\|168783593, gi... - gi\|188999099\|gb\|EDU68085.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878359... gi\|209773506, gi... - pir\|\|E85668 hypothetical protein yceB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|188018179, gi... - gi\|188018179\|gb\|EDU56301.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874716... gi\|254792445, gi... - gi\|254792445\|ref\|YP_003077282.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|168758647, gi... - gi\|189354574\|gb\|EDU72993.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875864... gi\|12514598, gi\|... - gi\|15801180\|ref\|NP_287197.1\| hypothetical protein Z1700 [Escherichia coli O157:H7 EDL933], gi\|125145... gi\|15830695, gi\|... - gi\|15830695\|ref\|NP_309468.1\| hypothetical protein ECs1441 [Escherichia coli O157:H7], gi\|13360905\|db... gi\|15830695, gi\|... - gi\|15830695\|ref\|NP_309468.1\| hypothetical protein ECs1441 [Escherichia coli O157:H7 str. Sakai], gi\|...	231.0	[0..1]	[186..1]
gi\|188489715, gi... - gi\|75513507\|ref\|ZP_00735911.1\| hypothetical protein Ecol5_01002497 [Escherichia coli 53638], gi\|1884...	231.0	[0..1]	[186..1]
gi\|157154992, gi... - gi\|75190121\|ref\|ZP_00703388.1\| hypothetical protein EcolE_01003415 [Escherichia coli E24377A], gi\|15...	231.0	[0..1]	[186..1]
gi\|75257499, gi\|... - gi\|75257499\|ref\|ZP_00729002.1\| hypothetical protein EcolE2_01002754 [Escherichia coli E22], gi\|19306...	231.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFLFAAAL IVSGLLVGCN QLTQYTITEQ EINQSLAKHN NFSKDIGLPG VADAHIVLTN  60
   61 LTSQIGREEP NKVTLTGDAN LDMNSLFGSQ KATMKLKLKA LPVFDKEKGA IFLKEMEVVD 120
  121 ATVQPEKMQT VMQTLLPYLN QALRNYFNQQ PAYVLREDGS QGEAMAKKLA KGIEVKPGEI 180
  181 VIPFTD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	144.619789
Match:	PF07273.3
Description:	No description for PF07273.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits