YRC Public Data Repository - Protein Structure Prediction

Protein:	LOLB_SHIBS
Organism:	Shigella boydii Sb227
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOLB_SHIBS.

Description	E-value	Query Range	Subject Range
gi\|227836573, gi... - gi\|227886369\|ref\|ZP_04004174.1\| outer membrane lipoprotein LolB [Escherichia coli 83972], gi\|2278365... gi\|26247532, gi\|... - gi\|26247532\|ref\|NP_753572.1\| outer membrane lipoprotein LolB [Escherichia coli CFT073], gi\|26107933\|...	247.0	[0..1]	[207..23]
gi\|115512551, gi... - gi\|117623427\|ref\|YP_852340.1\| outer membrane lipoprotein LolB [Escherichia coli APEC O1], gi\|1155125... gi\|91210430, gi\|... - gi\|91210430\|ref\|YP_540416.1\| outer membrane lipoprotein LolB [Escherichia coli UTI89], gi\|91072004\|g... gi\|226899929, gi... - gi\|237705172\|ref\|ZP_04535653.1\| outer membrane lipoprotein LolB [Escherichia sp. 3_2_53FAA], gi\|2268...	245.0	[0..1]	[207..23]
gi\|75255055 - gi\|75255055\|ref\|ZP_00726960.1\| COG3017: Outer membrane lipoprotein involved in outer membrane biogen...	245.0	[0..1]	[207..18]
LOLB_ECOL6 - Outer-membrane lipoprotein lolB OS=Escherichia coli O6 GN=lolB PE=3 SV=2 LOLB_ECOL6 - Outer-membrane lipoprotein LolB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lo...	243.0	[0..1]	[207..1]
LOLB_ECOL5 - Outer-membrane lipoprotein LolB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lolB PE=3 SV=1	243.0	[0..1]	[207..1]
LOLB_SHIDS - Outer-membrane lipoprotein LolB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lolB PE=3 SV=1	242.0	[0..1]	[207..1]
gi\|216524 - gi\|216524\|dbj\|BAA01105.1\| 5-aminolevulinate synthase [Escherichia coli]	242.0	[0..1]	[207..1]
LOLB_SHISS - Outer-membrane lipoprotein LolB OS=Shigella sonnei (strain Ss046) GN=lolB PE=3 SV=1	241.0	[0..1]	[207..1]
LOLB_SALTI - Outer-membrane lipoprotein lolB OS=Salmonella typhi GN=lolB PE=3 SV=1 gi\|213426493 - gi\|213426493\|ref\|ZP_03359243.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... gi\|213583755 - gi\|213583755\|ref\|ZP_03365581.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... gi\|213609488 - gi\|213609488\|ref\|ZP_03369314.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... gi\|214000991 - gi\|214000991\|ref\|ZP_03411726.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... gi\|29137197, gi\|... - gi\|29141570\|ref\|NP_804912.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica se... gi\|16760671 - gi\|16760671\|ref\|NP_456288.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica se... gi\|213029196 - gi\|213029196\|ref\|ZP_03343643.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALTI - Outer-membrane lipoprotein LolB OS=Salmonella typhi GN=lolB PE=3 SV=1 gi\|213051788 - gi\|213051788\|ref\|ZP_03344666.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica...	238.0	[0..1]	[207..1]
LOLB_SALNS - Outer-membrane lipoprotein LolB OS=Salmonella newport (strain SL254) GN=lolB PE=3 SV=1 gi\|205342558, gi... - gi\|205342558\|gb\|EDZ29322.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|194458011, gi... - gi\|194471647\|ref\|ZP_03077631.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALCH - Outer-membrane lipoprotein lolB OS=Salmonella choleraesuis GN=lolB PE=3 SV=1 LOLB_SALHS - Outer-membrane lipoprotein LolB OS=Salmonella heidelberg (strain SL476) GN=lolB PE=3 SV=1 gi\|168233810, gi... - gi\|205332130\|gb\|EDZ18894.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|205328663, gi... - gi\|205328663\|gb\|EDZ15427.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=lolB] [protein=outer membrane lipoprotein LolB] [protein_id=YP_005237708.1] [location=1886713.... gi\|168259996, gi... - gi\|205350608\|gb\|EDZ37239.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|205339662, gi... - gi\|205339662\|gb\|EDZ26426.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|205321984, gi... - gi\|205321984\|gb\|EDZ09823.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... LOLB_SALPB - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lolB PE=3... LOLB_SALTY - Outer-membrane lipoprotein lolB OS=Salmonella typhimurium GN=lolB PE=3 SV=2 LOLB_SALPC - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi C (strain RKS4594) GN=lolB PE=3 SV=1 gi\|204927663, gi... - gi\|204927663\|ref\|ZP_03218864.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... gi\|200389957, gi... - gi\|200389957\|ref\|ZP_03216568.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALEP - Outer-membrane lipoprotein LolB OS=Salmonella enteritidis PT4 (strain P125109) GN=lolB PE=3 SV=1 LOLB_SALG2 - Outer-membrane lipoprotein LolB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lolB PE=3 S... gi\|197264183, gi... - gi\|197264183\|ref\|ZP_03164257.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALA4 - Outer-membrane lipoprotein LolB OS=Salmonella agona (strain SL483) GN=lolB PE=3 SV=1 LOLB_SALDC - Outer-membrane lipoprotein LolB OS=Salmonella dublin (strain CT_02021853) GN=lolB PE=3 SV=1 LOLB_SALPK - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi A (strain AKU_12601) GN=lolB PE=3 SV=1 LOLB_SALTY - Outer-membrane lipoprotein lolB OS=Salmonella typhimurium GN=lolB PE=3 SV=2 LOLB_SALTY - Outer-membrane lipoprotein LolB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=l... LOLB_SALPB - Outer-membrane lipoprotein lolB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lolB PE=3... LOLB_SALPA - Outer-membrane lipoprotein lolB OS=Salmonella paratyphi A GN=lolB PE=3 SV=1 LOLB_SALPA - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lolB PE=3 S... LOLB_SALCH - Outer-membrane lipoprotein lolB OS=Salmonella choleraesuis GN=lolB PE=3 SV=1 LOLB_SALCH - Outer-membrane lipoprotein LolB OS=Salmonella choleraesuis (strain SC-B67) GN=lolB PE=3 SV=1 gi\|238913679 - gi\|238913679\|ref\|ZP_04657516.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica...	236.0	[0..1]	[207..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPDFRLIR LLPLAALVLT ACSVTTPKGP GKSPDSPQWR QHQQDVRNLN QYQTRGAFAY  60
   61 ISDQQKVYAR FFWQQTGQDR YRLLLTNPLG STELELNAQP GNVQLVDNKG QRYTADDAEE 120
  121 MIGKLTGMPI PLNSLRQWIL GLPGDATDYK LDDQYRLSEI TYSQNGKNWK VVYGGYDTKT 180
  181 QPAMPANMEL TDGGQRIKLK MDNWIVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1iwmA
Description:	Outer membrane lipoprotein receptor LolB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	5.26309175650793	bayes_pls_golite062009
protein transmembrane transporter activity	5.24235483861853	bayes_pls_golite062009
transporter activity	3.49447699177014	bayes_pls_golite062009
transmembrane transporter activity	3.40253685210141	bayes_pls_golite062009
substrate-specific transporter activity	3.1520022161519	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.10255727756177	bayes_pls_golite062009
protein binding	2.1080237568481	bayes_pls_golite062009
binding	1.76935925638807	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: