YRC Public Data Repository - Protein Structure Prediction

Protein:	EX7S_SHIDS
Organism:	Shigella dysenteriae Sd197
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EX7S_SHIDS.

Description	E-value	Query Range	Subject Range
gi\|71898769, gi\|... - gi\|71898769\|ref\|ZP_00680938.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7173153...	97.0	[0..1]	[77..49]
EX7S_ERWCT - Exodeoxyribonuclease 7 small subunit OS=Erwinia carotovora subsp. atroseptica GN=xseB PE=3 SV=1 EX7S_PECAS - Exodeoxyribonuclease 7 small subunit OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672...	95.0	[0..1]	[80..1]
gi\|71274977, gi\|... - gi\|71274977\|ref\|ZP_00651265.1\| Exonuclease VII, small subunit [Xylella fastidiosa Dixon], gi\|7116470... gi\|71729918, gi\|... - gi\|71900343\|ref\|ZP_00682478.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7172991...	94.0	[0..1]	[77..49]
gi\|89952462, gi\|... - gi\|90022862\|ref\|YP_528689.1\| exodeoxyribonuclease VII small subunit [Saccharophagus degradans 2-40],...	92.0	[0..3]	[79..36]
gi\|75238749, gi\|... - gi\|75238749\|ref\|ZP_00722737.1\| COG1722: Exonuclease VII small subunit [Escherichia coli F11], gi\|191... EX7S_ECOL5 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=xseB PE=3...	91.0	[0..1]	[80..1]
gi\|67085211, gi\|... - gi\|67157942\|ref\|ZP_00419087.1\| Exonuclease VII, small subunit [Azotobacter vinelandii AvOP], gi\|6708... gi\|67157942 - gi\|67157942\|ref\|ZP_00419087.1\| Exonuclease VII, small subunit [Azotobacter vinelandii AvOP]	91.0	[0..1]	[80..24]
EX7S_SHISS - Exodeoxyribonuclease 7 small subunit OS=Shigella sonnei (strain Ss046) GN=xseB PE=3 SV=1	91.0	[0..1]	[80..1]
EX7S_SODGM - Exodeoxyribonuclease 7 small subunit OS=Sodalis glossinidius (strain morsitans) GN=xseB PE=3 SV=1	88.0	[0..1]	[80..1]
gi\|83593949, gi\|... - gi\|83593949\|ref\|YP_427701.1\| exodeoxyribonuclease VII small subunit [Rhodospirillum rubrum ATCC 1117...	88.0	[0..5]	[77..48]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKNEAPAS FEKALSELEQ IVTRLESGDL PLEEALNEFE RGVQLARQGQ AKLQQAEQRV  60
   61 QILLSDNEDA SLTPFTPDNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1vp7A
Description:	Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits