YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61354883, gi\|...
Organism:	synthetic construct
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61354883, gi|....

Description	E-value	Query Range	Subject Range
SMS_MOUSE - Somatostatin OS=Mus musculus GN=Sst PE=3 SV=1 SMS_RAT - Somatostatin OS=Rattus norvegicus GN=Sst PE=1 SV=1	1.0E-40	[1..116]	[1..116]
SMS_CANLF - Somatostatin OS=Canis lupus familiaris GN=SST PE=3 SV=1	3.0E-40	[1..116]	[1..116]
gi\|109052804 - gi\|109052804\|ref\|XP_001103516.1\| PREDICTED: similar to somatostatin preproprotein [Macaca mulatta] gi\|149731202 - gi\|149731202\|ref\|XP_001499743.1\| PREDICTED: similar to preprosomatostatin [Equus caballus] gi\|73697560, gi\|... - gi\|73697560\|gb\|AAZ81422.1\| somatostatin [Bos taurus], gi\|73586769\|gb\|AAI03254.1\| SST protein [Bos ta... SMS_SHEEP - Somatostatin OS=Ovis aries GN=SST PE=3 SV=1 SMS_PIG - Somatostatin OS=Sus scrofa GN=SST PE=1 SV=3 CCDS3288.1_1 - null gi\|55621730 - gi\|55621730\|ref\|XP_526419.1\| PREDICTED: similar to preprosomatostatin [Pan troglodytes]	6.0E-40	[1..116]	[1..116]
gi\|60824818, gi\|... - gi\|61365073\|gb\|AAX42649.1\| somatostatin [synthetic construct], gi\|60824818\|gb\|AAX36695.1\| somatostat...	7.0E-40	[1..116]	[1..116]
SMS_BOVIN - Somatostatin OS=Bos taurus GN=SST PE=3 SV=1	1.0E-39	[1..116]	[1..116]
SMS_CHICK - Somatostatin OS=Gallus gallus GN=SST PE=3 SV=1	4.0E-36	[1..116]	[1..116]
SMS1_PELRI - Somatostatin-1 OS=Pelophylax ridibundus GN=sst1 PE=1 SV=1	1.0E-34	[1..116]	[1..115]
gi\|148228247, gi... - gi\|32454336\|gb\|AAP82964.1\| somatostatin 1b precursor [Xenopus laevis], gi\|213626673\|gb\|AAI69851.1\| S...	3.0E-34	[1..116]	[1..115]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCRLQCAL AALSIVLALG CVTGAPSDPR LRQFLQKSLA AAAGKQELAK YFLAELLSEP  60
   61 NQTENDALEP EDLSQAAEQD EMRLELQRSA NSNPAMAPRE RKAGCKNFFW KTFTSC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.574	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.378	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.369	a.74.1	Cyclin-like
View	Download	0.324	a.24.3	Cytochromes
View	Download	0.295	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits