YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61358387, gi\|...
Organism:	synthetic construct
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61358387, gi|....

Description	E-value	Query Range	Subject Range
gi\|61368488, gi\|... - gi\|61368488\|gb\|AAX43188.1\| interleukin 9 [synthetic construct], gi\|60828297\|gb\|AAX36837.1\| interleuk...	1.0E-67	[1..144]	[1..144]
gi\|42542602 - gi\|42542602\|gb\|AAH66284.1\| Interleukin 9 [Homo sapiens]	2.0E-67	[1..144]	[1..144]
gi\|114601802 - gi\|114601802\|ref\|XP_001168618.1\| PREDICTED: similar to IL9 [Pan troglodytes]	5.0E-67	[1..144]	[1..144]
IL9_MOUSE - Interleukin-9 OS=Mus musculus GN=Il9 PE=1 SV=1 gi\|147897883, gi... - gi\|147897883\|gb\|AAI40270.1\| Interleukin 9 [synthetic construct], gi\|146327326\|gb\|AAI41642.1\| Interle...	4.0E-65	[1..143]	[1..143]
gi\|33088187 - gi\|33088187\|gb\|AAP93197.1\| interleukin 9 [Sigmodon hispidus]	2.0E-61	[1..141]	[1..144]
gi\|109078696 - gi\|109078696\|ref\|XP_001110897.1\| PREDICTED: similar to interleukin 9 precursor [Macaca mulatta]	6.0E-61	[1..144]	[1..145]
gi\|109505449, gi... - gi\|109505449\|ref\|XP_001068265.1\| PREDICTED: similar to Interleukin-9 precursor (IL-9) (T-cell growth...	4.0E-51	[38..143]	[113..218]
gi\|76671538 - gi\|76671538\|ref\|XP_869221.1\| PREDICTED: similar to IL9 [Bos taurus]	5.0E-35	[1..139]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAMVLTSA LLLCSVAGQG CPTLAGILDI NFLINKMQED PASKCHCSAN VTSCLCLGIP  60
   61 SDNCTRPCFS ERLSQMTNTT MQTRYPLIFS RVKKSVEVLK NNKCPYFSCE QPCNQTTAGN 120
  121 ALTFLKSLLE IFQKEKMRGM RGKI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.744727
Match:	PF01415.7
Description:	No description for PF01415.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits