YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65320898
Organism:	Bacillus anthracis str. A2012
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65320898.

Description	E-value	Query Range	Subject Range
gi\|75241640, gi\|... - gi\|75241640\|ref\|ZP_00725477.1\| COG0013: Alanyl-tRNA synthetase [Escherichia coli F11], gi\|191171366\|...	0.0	[7..411]	[450..875]
gi\|77975908, gi\|... - gi\|77975908\|ref\|ZP_00831441.1\| COG0013: Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641], ...	0.0	[5..411]	[448..875]
gi\|218366454, gi... - gi\|218559685\|ref\|YP_002392598.1\| alanyl-tRNA synthetase [Escherichia coli S88], gi\|218366454\|emb\|CAR... SYA_ECOK1 - Alanine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=alaS PE=3 SV=1 gi\|237706683, gi... - gi\|237706683\|ref\|ZP_04537164.1\| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226899723\|gb\|... SYA_ECOUT - Alanine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=alaS PE=3 SV=1	0.0	[7..411]	[450..875]
SYA_MANSM - Alanine--tRNA ligase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=alaS PE=3 SV=1	0.0	[5..411]	[447..875]
gi\|227888232, gi... - gi\|227888232\|ref\|ZP_04006037.1\| alanyl-tRNA synthetase [Escherichia coli 83972], gi\|227834501\|gb\|EEJ... SYA_ECOHS - Alanine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=alaS PE=3 SV=1 gi\|218428383, gi... - gi\|218690819\|ref\|YP_002399031.1\| alanyl-tRNA synthetase [Escherichia coli ED1a], gi\|218428383\|emb\|CA...	0.0	[7..411]	[450..875]
SYA_ECOL5 - Alanine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=alaS PE=3 SV=1	0.0	[7..411]	[450..875]
gi\|77976225, gi\|... - gi\|77976225\|ref\|ZP_00831736.1\| COG0013: Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909], gi\|...	0.0	[5..411]	[448..875]
SYA_SODGM - Alanine--tRNA ligase OS=Sodalis glossinidius (strain morsitans) GN=alaS PE=3 SV=1	0.0	[5..411]	[448..875]
gi\|145220 - gi\|145220\|gb\|AAA03208.1\| alanyl-tRNA synthetase [Escherichia coli]	0.0	[7..411]	[450..875]
gi\|75512393, gi\|... - gi\|75512393\|ref\|ZP_00734945.1\| COG0013: Alanyl-tRNA synthetase [Escherichia coli 53638], gi\|18849203... gi\|238901834, gi... - gi\|238901834\|ref\|YP_002927630.1\| alanyl-tRNA synthetase [Escherichia coli BW2952], gi\|238859951\|gb\|A... SYA_ECODH - Alanine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=alaS PE=3 SV=1 SYA_ECOLI - Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS) - Escherichia coli gi\|1800083, gi\|8... - gi\|89109484\|ref\|AP_003264.1\| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110], gi\|1... EG10034 - alanyl-tRNA synthetase / Alanine--tRNA ligase, autorepressor gi\|194422121, gi... - gi\|83585644\|ref\|ZP_00924287.1\| COG0013: Alanyl-tRNA synthetase [Escherichia coli 101-1], gi\|19443900... gi\|226839360, gi... - gi\|254037736\|ref\|ZP_04871794.1\| alanyl t-RNA synthetase [Escherichia sp. 1_1_43], gi\|226839360\|gb\|EE... EG10034 - alanyl-tRNA synthetase / Alanine--tRNA ligase, autorepressor	0.0	[7..411]	[450..875]

Back

Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLANTKGER KLEQKLYYTD AYKQDFTTKV IKQDYDKDGN LYVILNETVF YPTGGGQPHD  60
   61 TGTLNGIAVL GVEEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	2e1bA
Description:	No description for 2e1bA was found.

Predicted Domain #2

Region A:
Residues: [76-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEEIRHFIAE QLHTEEVEGK INWERRFDHM QQHAAQHILS AAFWDYFNIP TIGFHLGKET  60
   61 VTIDLETENL HAETVEKAVQ IANKIVFENH PILIKWMNLE EAKTLPLRKE PTMTENIRVV 120
  121 MIENFDYNGC GGTHPKRTGE VGPIQVLGWE RNKGGIRLTF IAGWRTLKLM GQQQQIMKDV 180
  181 SKQLNSSEAD IPAKVAQLLT SQKENKKAMQ TMTEKLLYTE ANELLQQPTK IHAGILISKV 240
  241 FTNRSMQEIA KLSAIITEQQ EHAITYFVIE NED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1qf6A
Description:	Threonyl-tRNA synthetase (ThrRS), C-terminal domain; Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain; Threonyl-tRNA synthetase (ThrRS), second 'additional' domain; Threonyl-tRNA synthetase (ThrRS)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [349-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLQCILACGK TVTLDMNALL KEALPTIEGK GGGNKKSARG GGKAMMSGDE FLNQLISSLQ  60
   61 SAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits