YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60656297, gi\|...
Organism:	synthetic construct
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60656297, gi|....

Description	E-value	Query Range	Subject Range
gi\|71682965, gi\|... - gi\|74271859\|ref\|NP_001028241.1\| eukaryotic translation initiation factor 4E binding protein 2 [Rattu...	7.0E-47	[1..120]	[1..120]
4EBP2_MOUSE - Eukaryotic translation initiation factor 4E-binding protein 2 OS=Mus musculus GN=Eif4ebp2 PE=1 SV=1	2.0E-46	[1..120]	[1..120]
gi\|49457474 - gi\|49457474\|emb\|CAG47036.1\| EIF4EBP2 [Homo sapiens]	2.0E-46	[1..120]	[1..120]
tr\|G1SJT0\|G1SJT0... - pep:novel chromosome:oryCun2:18:16549838:16567388:-1 gene:ENSOCUG00000003475 transcript:ENSOCUT00000... gi\|119918532 - gi\|119918532\|ref\|XP_001250585.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E-b... gi\|73953390 - gi\|73953390\|ref\|XP_546145.2\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi...	3.0E-46	[1..120]	[1..120]
gi\|39794331, gi\|... - gi\|45361513\|ref\|NP_989333.1\| eukaryotic translation initiation factor 4E binding protein 2 [Xenopus ...	8.0E-42	[6..120]	[2..113]
gi\|148236683, gi... - gi\|49670444\|gb\|AAH75198.1\| MGC83416 protein [Xenopus laevis], gi\|148236683\|ref\|NP_001086480.1\| MGC83...	4.0E-41	[6..120]	[2..113]
gi\|47086433, gi\|... - gi\|47086433\|ref\|NP_997968.1\| eukaryotic translation initiation factor 4E binding protein 2 [Danio re...	1.0E-40	[6..120]	[2..113]
gi\|47223260 - gi\|47223260\|emb\|CAF98644.1\| unnamed protein product [Tetraodon nigroviridis]	2.0E-39	[8..120]	[2..112]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSAGSGHQ PSQSRAIPTR TVAISDAAQL PHDYCTTPGG TLFSTTPGGT RIIYDRKFLL  60
   61 DRRNSPMAQT PPCHLPNIPG VTSPGTLIED SKVEVNNLNN LNNHDRKHAV GDDAQFEMDI 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.29243
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits