YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_SHIB3
Organism:	Shigella boydii CDC 3083-94
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_SHIB3.

Description	E-value	Query Range	Subject Range
gi\|242379721, gi... - gi\|251787448\|ref\|YP_003001752.1\| hypothetical protein B21_04029 [Escherichia coli BL21], gi\|24237972... gi\|254164129, gi... - gi\|254164129\|ref\|YP_003047237.1\| 30S ribosomal protein S6 [Escherichia coli B str. REL606], gi\|25397... gi\|253980186, gi... - gi\|254290879\|ref\|YP_003056627.1\| 30S ribosomal protein S6 [Escherichia coli BL21(DE3)], gi\|253980186... gi\|75515437, gi\|... - gi\|75515437\|ref\|ZP_00737594.1\| COG0360: Ribosomal protein S6 [Escherichia coli 53638], gi\|188495956\|... gi\|194421548, gi... - gi\|83585062\|ref\|ZP_00923715.1\| COG0360: Ribosomal protein S6 [Escherichia coli 101-1], gi\|194439549\|...	164.0	[0..1]	[131..1]
gi\|205348027, gi... - gi\|205348027\|gb\|EDZ34658.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Hadar ... gi\|195632912, gi... - gi\|195632912\|gb\|EDX51366.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Newpor... gi\|238910548 - gi\|238910548\|ref\|ZP_04654385.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... RS6_SALCH - 30S ribosomal protein S6 OS=Salmonella choleraesuis GN=rpsF PE=3 SV=1 RS6_SALPA - 30S ribosomal protein S6 OS=Salmonella paratyphi A GN=rpsF PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rpsF] [protein=30S ribosomal protein S6] [protein_id=YP_005240706.1] [location=4643344..464373... gi\|213161637 - gi\|213161637\|ref\|ZP_03347347.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|213428643 - gi\|213428643\|ref\|ZP_03361393.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|213609730 - gi\|213609730\|ref\|ZP_03369556.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|213648999 - gi\|213648999\|ref\|ZP_03379052.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|204323394, gi... - gi\|204926729\|ref\|ZP_03217931.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Ja... RS6_SALG2 - 30S ribosomal protein S6 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rpsF PE=3 SV=1 RS6_SALEP - 30S ribosomal protein S6 OS=Salmonella enteritidis PT4 (strain P125109) GN=rpsF PE=3 SV=1 RS6_SALCH - 30S ribosomal protein S6 OS=Salmonella choleraesuis (strain SC-B67) GN=rpsF PE=3 SV=1 gi\|213028574 - gi\|213028574\|ref\|ZP_03343021.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... RS6_SALTY - 30S ribosomal protein S6 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rpsF PE=... RS6_SALA4 - 30S ribosomal protein S6 OS=Salmonella agona (strain SL483) GN=rpsF PE=3 SV=1 RS6_SALTI - 30S ribosomal protein S6 OS=Salmonella typhi GN=rpsF PE=3 SV=1 gi\|197240584, gi... - gi\|197262329\|ref\|ZP_03162403.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Sa... gi\|16763208 - gi\|16763208\|ref\|NP_458825.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serovar T... RS6_SALPK - 30S ribosomal protein S6 OS=Salmonella paratyphi A (strain AKU_12601) GN=rpsF PE=3 SV=1 gi\|29144687, gi\|... - gi\|29144687\|ref\|NP_808029.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serovar T... gi\|200389133, gi... - gi\|200389133\|ref\|ZP_03215745.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Vi... RS6_SALNS - 30S ribosomal protein S6 OS=Salmonella newport (strain SL254) GN=rpsF PE=3 SV=1 RS6_SALHS - 30S ribosomal protein S6 OS=Salmonella heidelberg (strain SL476) GN=rpsF PE=3 SV=1 RS6_SALPB - 30S ribosomal protein S6 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsF PE=3 SV=1 RS6_SALTI - 30S ribosomal protein S6 OS=Salmonella typhi GN=rpsF PE=3 SV=1 gi\|194457460, gi... - gi\|194471096\|ref\|ZP_03077080.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Ke... RS6_SALTY - 30S ribosomal protein S6 OS=Salmonella typhimurium GN=rpsF PE=3 SV=1 RS6_SALSV - 30S ribosomal protein S6 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsF PE=3 SV=1 RS6_SALPA - 30S ribosomal protein S6 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rpsF PE=3 SV=1 RS6_CROS8 - 30S ribosomal protein S6 OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rpsF PE=3 SV=1 gi\|213864945 - gi\|213864945\|ref\|ZP_03387064.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... RS6_SALPC - 30S ribosomal protein S6 OS=Salmonella paratyphi C (strain RKS4594) GN=rpsF PE=3 SV=1 gi\|283786874\|ref... - 30S ribosomal subunit protein S6 [Citrobacter rodentium ICC168] RS6_SALCH - 30S ribosomal protein S6 OS=Salmonella choleraesuis GN=rpsF PE=3 SV=1 RS6_SALTY - 30S ribosomal protein S6 OS=Salmonella typhimurium GN=rpsF PE=3 SV=1 RS6_SALPB - 30S ribosomal protein S6 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsF PE=3 SV=1	163.0	[0..1]	[131..1]
EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts RS6_ECOLI - 30S ribosomal protein S6 [Contains: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal ... EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts	162.0	[0..1]	[129..1]
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	161.0	[0..1]	[108..32]
gi\|54778759 - gi\|54778759\|gb\|AAV39593.1\| ribosomal protein S6 [synthetic construct]	160.0	[0..2]	[131..26]
gi\|90581366, gi\|... - gi\|90581366\|ref\|ZP_01237162.1\| 30S ribosomal protein S6 [Vibrio angustum S14], gi\|90437476\|gb\|EAS626...	159.0	[0..1]	[129..1]
RS6_SODGM - 30S ribosomal protein S6 OS=Sodalis glossinidius (strain morsitans) GN=rpsF PE=3 SV=1	159.0	[0..1]	[131..1]
RS6_PECAS - 30S ribosomal protein S6 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rpsF PE... RS6_ERWCT - 30S ribosomal protein S6 OS=Erwinia carotovora subsp. atroseptica GN=rpsF PE=3 SV=1	159.0	[0..1]	[131..1]
RS6_PHOLL - 30S ribosomal protein S6 OS=Photorhabdus luminescens subsp. laumondii GN=rpsF PE=3 SV=1 RS6_PHOLL - 30S ribosomal protein S6 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565...	159.0	[0..1]	[131..1]
gi\|89075974, gi\|... - gi\|89075974\|ref\|ZP_01162346.1\| 30S ribosomal protein S6 [Photobacterium sp. SKA34], gi\|89048323\|gb\|E...	159.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFMV HPDQSEQVPG MIERYTAAIT GAEGKIHRLE DWGRRQLAYP INKLHKAHYV  60
   61 LMNVEAPQEV IDELETTFRF NDAVIRSMVM RTKHAVTEAS PMVKAKDERR ERRDDFANET 120
  121 ADDAEAGDSE E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.72663177460478	bayes_pls_golite062009
structural molecule activity	9.15324307340032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: