YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157163638, gi...
Organism:	Escherichia coli HS
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157163638, gi....

Description	E-value	Query Range	Subject Range
gi\|77976467, gi\|... - gi\|77976467\|ref\|ZP_00831954.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye...	269.0	[0..1]	[334..1]
gi\|145600845, gi... - gi\|145600845\|ref\|YP_001164921.1\| FtsH protease regulator HflC [Yersinia pestis Pestoides F], gi\|1452... gi\|149289988, gi... - gi\|150260580\|ref\|ZP_01917308.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289988\|... gi\|22124548, gi\|... - gi\|22124548\|ref\|NP_667971.1\| FtsH protease regulator HflC [Yersinia pestis KIM], gi\|21957347\|gb\|AAM8... gi\|25509641 - pir\|\|AH0046 probable membrane protein hflC [imported] - Yersinia pestis (strain CO92) gi\|165926803, gi... - gi\|165926803\|ref\|ZP_02222635.1\| HflC protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|51594780, gi\|... - gi\|51594780\|ref\|YP_068971.1\| FtsH protease regulator HflC [Yersinia pseudotuberculosis IP 32953], gi... Q66FB2\|Q66FB2_YERPS - Putative membrane protein precursor - Yersinia pseudotuberculosis gi\|165989216, gi... - gi\|166011857\|ref\|ZP_02232755.1\| HflC protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|45435242, gi\|... - gi\|45440386\|ref\|NP_991925.1\| FtsH protease regulator HflC [Yersinia pestis biovar Microtus str. 9100... gi\|77632980, gi\|... - gi\|77632980\|ref\|ZP_00795141.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye... gi\|166213993, gi... - gi\|166213993\|ref\|ZP_02240028.1\| HflC protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|77631427, gi\|... - gi\|77631427\|ref\|ZP_00794013.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye... gi\|167049856, gi... - gi\|167400488\|ref\|ZP_02305997.1\| HflC protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|16120711, gi\|... - gi\|218927579\|ref\|YP_002345454.1\| FtsH protease regulator HflC [Yersinia pestis CO92], gi\|16120711\|re... gi\|167418832, gi... - gi\|167418832\|ref\|ZP_02310585.1\| HflC protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|229903935, gi... - gi\|229903935\|ref\|ZP_04519048.1\| modulator for HflB protease specific for phage lambda cII repressor ... gi\|89102916, gi\|... - gi\|89102916\|ref\|ZP_01175518.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye... gi\|108809898, gi... - gi\|108809898\|ref\|YP_653814.1\| FtsH protease regulator HflC [Yersinia pestis Antiqua], gi\|108781811\|g... gi\|167423354, gi... - gi\|167423354\|ref\|ZP_02315107.1\| HflC protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|169752544, gi... - gi\|170026010\|ref\|YP_001722515.1\| FtsH protease regulator HflC [Yersinia pseudotuberculosis YPIII], g... gi\|186893788, gi... - gi\|186893788\|ref\|YP_001870900.1\| FtsH protease regulator HflC [Yersinia pseudotuberculosis PB1/+], g... gi\|229842326, gi... - gi\|229842326\|ref\|ZP_04462481.1\| modulator for HflB protease specific for phage lambda cII repressor ... gi\|229696614, gi... - gi\|229840248\|ref\|ZP_04460407.1\| modulator for HflB protease specific for phage lambda cII repressor ... gi\|229836636, gi... - gi\|229836636\|ref\|ZP_04456802.1\| modulator for HflB protease specific for phage lambda cII repressor ...	269.0	[0..1]	[334..1]
gi\|238787542, gi... - gi\|77973966\|ref\|ZP_00829509.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye...	258.0	[0..17]	[334..17]
gi\|82779443, gi\|... - gi\|82779443\|ref\|YP_405792.1\| FtsH protease regulator HflC [Shigella dysenteriae Sd197], gi\|81243591\|...	256.0	[0..17]	[334..17]
gi\|238718602, gi... - gi\|77961302\|ref\|ZP_00825143.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye...	255.0	[0..16]	[334..16]
gi\|238784770, gi... - gi\|77957809\|ref\|ZP_00821856.1\| COG0330: Membrane protease subunits, stomatin/prohibitin homologs [Ye...	252.0	[0..16]	[334..16]
gi\|50122851, gi\|... - gi\|50122851\|ref\|YP_052018.1\| FtsH protease regulator HflC [Pectobacterium atrosepticum SCRI1043], gi...	251.0	[0..1]	[329..1]
gi\|16422925, gi\|... - gi\|16767610\|ref\|NP_463225.1\| FtsH protease regulator HflC [Salmonella typhimurium LT2], gi\|16422925\|... gi\|16505491, gi\|... - gi\|25514776\|pir\|\|AD1049 HflC protein (EC 3.4.-.-) [imported] - Salmonella enterica subsp. enterica s... gi\|16763183 - gi\|16763183\|ref\|NP_458800.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica serov... gi\|29144662, gi\|... - gi\|29144662\|ref\|NP_808004.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica serov... gi\|62182810, gi\|... - gi\|62182810\|ref\|YP_219227.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica serov... gi\|56130412, gi\|... - gi\|56416155\|ref\|YP_153230.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica serov... gi\|194472625, gi... - gi\|194472625\|ref\|ZP_03078609.1\| HflC protein [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|194407607, gi... - gi\|194449303\|ref\|YP_002048407.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica s... gi\|194401911, gi... - gi\|194443248\|ref\|YP_002043619.1\| HflC protein [Salmonella enterica subsp. enterica serovar Newport s... gi\|205341103, gi... - gi\|205341103\|gb\|EDZ27867.1\| HflC protein [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|197096558, gi... - gi\|197365081\|ref\|YP_002144718.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica s... gi\|197241074, gi... - gi\|197262819\|ref\|ZP_03162893.1\| HflC protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197212842, gi... - gi\|197249139\|ref\|YP_002149278.1\| HflC protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|194736576, gi... - gi\|194736576\|ref\|YP_002117305.1\| HflC protein [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|168231399, gi... - gi\|205334261\|gb\|EDZ21025.1\| HflC protein [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|205327106, gi... - gi\|205327106\|gb\|EDZ13870.1\| HflC protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205321595, gi... - gi\|205321595\|gb\|EDZ09434.1\| HflC protein [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|161617634, gi... - gi\|161617634\|ref\|YP_001591599.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica s... gi\|168464752, gi... - gi\|195632951\|gb\|EDX51405.1\| HflC protein [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205347939, gi... - gi\|205347939\|gb\|EDZ34570.1\| HflC protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168244858, gi... - gi\|205336309\|gb\|EDZ23073.1\| HflC protein [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|197287600, gi... - gi\|197287600\|gb\|EDY26992.1\| HflC protein [Salmonella enterica subsp. enterica serovar Schwarzengrund... lcl\|NC_016856.1_... - [gene=hflC] [protein=FtsH protease regulator HflC] [protein_id=YP_005240676.1] [location=4620543..46... gi\|224586204, gi... - gi\|224586204\|ref\|YP_002640003.1\| HflC protein [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|213852961 - gi\|213852961\|ref\|ZP_03382493.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica se... gi\|238910522 - gi\|238910522\|ref\|ZP_04654359.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica se... gi\|206711313, gi... - gi\|207859510\|ref\|YP_002246161.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica s... gi\|205274903, gi... - gi\|205355122\|ref\|YP_002228923.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica s... gi\|199604991, gi... - gi\|200387893\|ref\|ZP_03214505.1\| HflC protein [Salmonella enterica subsp. enterica serovar Virchow st... gi\|198244529, gi... - gi\|198244529\|ref\|YP_002218248.1\| HflC protein [Salmonella enterica subsp. enterica serovar Dublin st... gi\|213648972 - gi\|213648972\|ref\|ZP_03379025.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica se... gi\|213579996 - gi\|213579996\|ref\|ZP_03361822.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica se... gi\|213428669 - gi\|213428669\|ref\|ZP_03361419.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica se... gi\|213052279 - gi\|213052279\|ref\|ZP_03345157.1\| FtsH protease regulator HflC [Salmonella enterica subsp. enterica se...	249.0	[0..17]	[334..17]
gi\|33519560, gi\|... - gi\|33519560\|ref\|NP_878392.1\| FtsH protease regulator HflC [Candidatus Blochmannia floridanus], gi\|33...	241.0	[0..1]	[330..2]
gi\|84778838, gi\|... - gi\|85058318\|ref\|YP_454020.1\| FtsH protease regulator HflC [Sodalis glossinidius str. 'morsitans'], g...	241.0	[0..17]	[329..17]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSVIAIII IVLVVLYMSV FVVKEGERGI TLRFGKVLRD DDNKPLVYEP GLHFKIPFIE  60
   61 TVKMLDARIQ TMDNQADRFV TKEKKDLIVD SYIKWRISDF SRYYLATGGG DISQAEVLLK 120
  121 RKFSDRLRSE IGRLDVKDIV TDSRGRLTLE VRDALNSGSA GTEDEVTTPA ADNAIAEAAE 180
  181 RVTAETKGKV PVINPNSMAA LGIEVVDVRI KQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.30103
Match:	1winA
Description:	Solution Structure of the Band 7 Domain of the mouse Flotillin 2 Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.46226529578211	bayes_pls_golite062009
protein binding	0.769979871341236	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [214-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLPTEVSEAI YNRMRAEREA VARRHRSQGQ EEAEKLRATA DYEVTRTLAE AERQGRIMRG  60
   61 EGDAEAAKLF ADAFSKDPDF YAFIRSLRAY ENSFSGNQDV MVMSPDSDFF RYMKTPTSAT 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: