YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|74314411, gi\|...
Organism:	Shigella sonnei Ss046
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|74314411, gi|....

Description	E-value	Query Range	Subject Range
gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7], gi\|13364312\|db... gi\|209747424, gi... - pir\|\|D86080 hypothetical protein yiiM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518809, gi\|... - gi\|15804500\|ref\|NP_290540.1\| hypothetical protein Z5455 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7 str. Sakai], gi\|...	305.0	[0..1]	[234..1]
gi\|16131750, gi\|... - gb\|AAC76892.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|82546260, gi\|... - gi\|82546260\|ref\|YP_410207.1\| hypothetical protein SBO_3928 [Shigella boydii Sb227], gi\|81247671\|gb\|A... gi\|305014\|gb\|AAB... - ORF_o234 [Escherichia coli] gi\|305014, gi\|541118 - pir\|\|S40854 hypothetical 26.6K protein (kdgt-cpxa intergenic region) - Escherichia coli (strain K-12... gi\|226838563, gi... - gi\|254039127\|ref\|ZP_04873177.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683856...	303.0	[0..1]	[234..1]
gi\|227885349, gi... - gi\|227885349\|ref\|ZP_04003154.1\| MOSC domain protein [Escherichia coli 83972], gi\|227837725\|gb\|EEJ481... gi\|91075025, gi\|... - gi\|91213451\|ref\|YP_543437.1\| hypothetical protein YiiM [Escherichia coli UTI89], gi\|91075025\|gb\|ABE0... gi\|26250676, gi\|... - gi\|26250676\|ref\|NP_756716.1\| Hypothetical protein yiiM [Escherichia coli CFT073], gi\|26111107\|gb\|AAN...	303.0	[0..1]	[234..1]
gi\|39654307, gi\|... - gi\|39654308\|pdb\|1O65\|C Chain C, Crystal Structure Of An Hypothetical Protein, gi\|39654307\|pdb\|1O65\|B...	302.0	[0..1]	[234..3]
gi\|75176704 - gi\|75176704\|ref\|ZP_00696832.1\| COG2258: Uncharacterized protein conserved in bacteria [Shigella boyd...	301.0	[0..1]	[234..1]
gi\|81243070, gi\|... - gi\|82778922\|ref\|YP_405271.1\| hypothetical protein SDY_3836 [Shigella dysenteriae Sd197], gi\|81243070...	300.0	[0..1]	[234..1]
gi\|115515302, gi... - gi\|117626178\|ref\|YP_859501.1\| hypothetical protein APECO1_2558 [Escherichia coli APEC O1], gi\|115515... gi\|226902879, gi... - gi\|237702942\|ref\|ZP_04533423.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	293.0	[0..6]	[234..1]
gi\|194414568, gi... - gi\|75211275\|ref\|ZP_00711374.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157069064, gi... - gi\|75197783\|ref\|ZP_00707853.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218697625, gi... - gi\|218697625\|ref\|YP_002405292.1\| hypothetical protein EC55989_4389 [Escherichia coli 55989], gi\|2183... gi\|193063988, gi... - gi\|75258106\|ref\|ZP_00729567.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|190903542, gi... - gi\|75230432\|ref\|ZP_00716918.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194438346, gi... - gi\|83586245\|ref\|ZP_00924881.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... YIIM_ECOLI - Protein yiiM - Escherichia coli gi\|169757006, gi... - gi\|170022078\|ref\|YP_001727032.1\| hypothetical protein EcolC_4107 [Escherichia coli ATCC 8739], gi\|16... gi\|161984812 - gi\|161984812\|ref\|YP_410207.2\| hypothetical protein SBO_3928 [Shigella boydii Sb227] gi\|218363242, gi... - gi\|218556473\|ref\|YP_002389387.1\| hypothetical protein ECIAI1_4116 [Escherichia coli IAI1], gi\|218363... gi\|238902977, gi... - gi\|238902977\|ref\|YP_002928773.1\| hypothetical protein BWG_3580 [Escherichia coli BW2952], gi\|2388605... gi\|170083381, gi... - gi\|170083381\|ref\|YP_001732701.1\| hypothetical protein ECDH10B_4100 [Escherichia coli str. K-12 subst... gi\|251787174, gi... - gi\|251787174\|ref\|YP_003001478.1\| hypothetical protein B21_03745 [Escherichia coli BL21], gi\|24237944... EG11870 - 6-N-hydroxylaminopurine resistance protein / 6-N-hydroxylaminopurine resistance, function unknown gi\|254290612, gi... - gi\|254290612\|ref\|YP_003056360.1\| hypothetical protein ECD_03796 [Escherichia coli BL21(DE3)], gi\|253... gi\|254163861, gi... - gi\|254163861\|ref\|YP_003046969.1\| hypothetical protein ECB_03796 [Escherichia coli B str. REL606], gi... EG11870 - 6-N-hydroxylaminopurine resistance protein / 6-N-hydroxylaminopurine resistance, function unknown gi\|124527572, gi... - gi\|124527572\|ref\|ZP_01699037.1\| MOSC domain containing protein [Escherichia coli B], gi\|124501274\|gb... gi\|188489151, gi... - gi\|75513939\|ref\|ZP_00736292.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|85676149, gi\|... - gi\|89110118\|ref\|AP_003898.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	286.0	[0..11]	[234..1]
gi\|194433219, gi... - gi\|83569823\|ref\|ZP_00921272.1\| COG2258: Uncharacterized protein conserved in bacteria [Shigella dyse...	286.0	[0..11]	[234..1]
gi\|190907038, gi... - gi\|75240304\|ref\|ZP_00724244.1\| COG2258: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110345839, gi... - gi\|110644247\|ref\|YP_671977.1\| hypothetical protein ECP_4120 [Escherichia coli 536], gi\|110345839\|gb\|...	286.0	[0..11]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFLVEREQ MRYPVDVYTG KIQAYPEGKP SAIAKIQVDG ELMLTELGLE GDEQAEKKVH  60
   61 GGPDRALCHY PREHYLYWVR EFPEQAELFV APAFGENLST DGLTESNVHM GDIFRWGEAL 120
  121 IQVSQPRSPC YKLNYHFDIS DIAQLMQNTG KVGWLYSVIA PGKVSADAPL ELVSRVSDVT 180
  181 VQEAAAIAWH MPFDDDQYHR LLSAAGLSKS WTRTMQKRRL SGKIEDFSRR LWGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.09691
Match:	1o65A
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.442129199706088	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: