YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|188492552, gi...
Organism:	Escherichia coli 53638
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|188492552, gi....

Description	E-value	Query Range	Subject Range
gi\|115515080, gi... - gi\|117625956\|ref\|YP_859279.1\| hypothetical protein APECO1_2777 [Escherichia coli APEC O1], gi\|115515... gi\|218367525, gi... - gi\|218560756\|ref\|YP_002393669.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|226902742, gi... - gi\|237703478\|ref\|ZP_04533959.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91213203, gi\|... - gi\|91213203\|ref\|YP_543189.1\| hypothetical protein UTI89_C4231 [Escherichia coli UTI89], gi\|91074777\|...	205.0	[0..1]	[120..1]
gi\|194425123, gi... - gi\|83588458\|ref\|ZP_00927082.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ...	204.0	[0..1]	[120..1]
gi\|82779210, gi\|... - gi\|82779210\|ref\|YP_405559.1\| hypothetical protein SDY_4159 [Shigella dysenteriae Sd197], gi\|81243358...	203.0	[0..1]	[120..1]
gi\|110644023, gi... - gi\|110644023\|ref\|YP_671753.1\| hypothetical protein ECP_3881 [Escherichia coli 536], gi\|110345615\|gb\|... gi\|218691968, gi... - gi\|218691968\|ref\|YP_002400180.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|75242530, gi\|... - gi\|75242530\|ref\|ZP_00726274.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ...	203.0	[0..1]	[120..1]
gi\|56415686, gi\|... - gi\|56415686\|ref\|YP_152761.1\| hypothetical protein SPA3655 [Salmonella enterica subsp. enterica serov... gi\|197364613, gi... - gi\|197364613\|ref\|YP_002144250.1\| hypothetical protein SSPA3413 [Salmonella enterica subsp. enterica ...	192.0	[0..1]	[116..1]
gi\|205325725, gi... - gi\|205325725\|gb\|EDZ13564.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|238910152 - gi\|238910152\|ref\|ZP_04653989.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica ser... gi\|16422377, gi\|... - gi\|16767090\|ref\|NP_462705.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164223... gi\|62182296, gi\|... - gi\|62182296\|ref\|YP_218713.1\| hypothetical protein SC3726 [Salmonella enterica subsp. enterica serova... gi\|198245789, gi... - gi\|198245789\|ref\|YP_002217751.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica se... gi\|204321924, gi... - gi\|204928491\|ref\|ZP_03219690.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica ser... gi\|194736027, gi... - gi\|194736027\|ref\|YP_002116746.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica se... gi\|197215579, gi... - gi\|197251876\|ref\|YP_002148740.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yidG] [protein=putative inner membrane protein] [protein_id=YP_005240068.1] [location=compleme... gi\|168818344, gi... - gi\|205344530\|gb\|EDZ31294.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|194471448, gi... - gi\|194471448\|ref\|ZP_03077432.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica ser... gi\|197291482, gi... - gi\|197291482\|gb\|EDY30834.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|205350420, gi... - gi\|205350420\|gb\|EDZ37051.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|167992389, gi... - gi\|205329400\|gb\|EDZ16164.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|205332505, gi... - gi\|205332505\|gb\|EDZ19269.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar...	190.0	[0..1]	[116..1]
gi\|29139641, gi\|... - gi\|29144005\|ref\|NP_807347.1\| hypothetical protein t3713 [Salmonella enterica subsp. enterica serovar... gi\|213418794 - gi\|213418794\|ref\|ZP_03351860.1\| hypothetical protein Salmonentericaenterica_13414 [Salmonella enteri... gi\|16762516 - gi\|16762516\|ref\|NP_458133.1\| hypothetical protein STY3975 [Salmonella enterica subsp. enterica serov... gi\|213163798 - gi\|213163798\|ref\|ZP_03349508.1\| hypothetical protein Salmoneentericaenterica_28821 [Salmonella enter... gi\|213028828 - gi\|213028828\|ref\|ZP_03343275.1\| hypothetical protein Salmonelentericaenterica_44088 [Salmonella ente... gi\|25372029, gi\|... - gi\|25372029\|pir\|\|AI0961 conserved hypothetical protein STY3975 [imported] - Salmonella enterica subs... gi\|213850317 - gi\|213850317\|ref\|ZP_03381215.1\| hypothetical protein SentesT_01540 [Salmonella enterica subsp. enter... gi\|213618644 - gi\|213618644\|ref\|ZP_03372470.1\| hypothetical protein SentesTyp_20135 [Salmonella enterica subsp. ent... gi\|213582789 - gi\|213582789\|ref\|ZP_03364615.1\| hypothetical protein SentesTyph_16918 [Salmonella enterica subsp. en... gi\|213426314 - gi\|213426314\|ref\|ZP_03359064.1\| hypothetical protein SentesTyphi_12169 [Salmonella enterica subsp. e... gi\|214001484 - gi\|214001484\|ref\|ZP_03412219.1\| hypothetical protein Salmonellentericaenterica_13785 [Salmonella ent... gi\|213973990 - gi\|213973990\|ref\|ZP_03401249.1\| hypothetical protein Salmonellaentericaenterica_04896 [Salmonella en...	188.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSRKARRI ADPGLQPERT SLAWFRTMLG YGALMALAIK HNWHQAGMLF WISIGILAIV  60
   61 ALILWHYTRN RNLMDVTNSD FSQFHVVRDK FLISLAVLSL AILFAVTHIH QLIVFIERVA 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits