YRC Public Data Repository - Protein Structure Prediction

Protein:	CBRB_SHISS
Organism:	Shigella sonnei Ss046
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBRB_SHISS.

Description	E-value	Query Range	Subject Range
YIEI_ECOLI - Inner membrane protein yieI - Escherichia coli gi\|238902807, gi... - gi\|238902807\|ref\|YP_002928603.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|169891053, gi... - gi\|170083218\|ref\|YP_001732538.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|89110291, gi\|... - gi\|89110291\|ref\|AP_004071.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... EG11726 - PRK09823 family inner membrane protein, creBC regulon / PRK09823 family inner membrane protein, creB... EG11726 - PRK09823 family inner membrane protein, creBC regulon / PRK09823 family inner membrane protein, creB...	229.0	[0..1]	[157..1]
gi\|215267128, gi... - gi\|215489056\|ref\|YP_002331487.1\| putative inner membrane protein [Escherichia coli O127:H6 str. E234... gi\|218367561, gi... - gi\|218560792\|ref\|YP_002393705.1\| putative inner membrane protein [Escherichia coli S88], gi\|21836756... gi\|218429569, gi... - gi\|218692005\|ref\|YP_002400217.1\| putative inner membrane protein [Escherichia coli ED1a], gi\|2184295... gi\|226902781, gi... - gi\|237703517\|ref\|ZP_04533998.1\| inner membrane protein cbrB [Escherichia sp. 3_2_53FAA], gi\|22690278... CBRB_ECOK1 - Inner membrane protein CbrB OS=Escherichia coli O1:K1 / APEC GN=cbrB PE=3 SV=1 CBRB_ECOUT - Inner membrane protein CbrB OS=Escherichia coli (strain UTI89 / UPEC) GN=cbrB PE=3 SV=1	228.0	[0..1]	[157..1]
CBRB_ECOL6 - Inner membrane protein CbrB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cbrB P... gi\|227839216, gi... - gi\|227883938\|ref\|ZP_04001743.1\| inner membrane protein [Escherichia coli 83972], gi\|227839216\|gb\|EEJ... CBRB_ECOL6 - Inner membrane protein CbrB OS=Escherichia coli O6 GN=cbrB PE=3 SV=1	228.0	[0..1]	[157..1]
CBRB_ECOL5 - Inner membrane protein CbrB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cbrB PE=3 SV=1 gi\|191170512, gi... - gi\|191170512\|ref\|ZP_03032065.1\| hypothetical protein EcF11_5002 [Escherichia coli F11], gi\|190909320...	228.0	[0..1]	[157..1]
gi\|83588420 - gi\|83588420\|ref\|ZP_00927044.1\| hypothetical protein Ecol1_01000041 [Escherichia coli 101-1]	159.0	[0..57]	[157..2]
gi\|75242496 - gi\|75242496\|ref\|ZP_00726240.1\| hypothetical protein EcolF_01000405 [Escherichia coli F11]	150.0	[0..62]	[157..1]
gi\|75514223 - gi\|75514223\|ref\|ZP_00736531.1\| hypothetical protein Ecol5_01001716 [Escherichia coli 53638] gi\|75258254 - gi\|75258254\|ref\|ZP_00729702.1\| hypothetical protein EcolE2_01002026 [Escherichia coli E22] gi\|75236438 - gi\|75236438\|ref\|ZP_00720534.1\| hypothetical protein EcolE1_01002217 [Escherichia coli E110019] gi\|75210674 - gi\|75210674\|ref\|ZP_00710815.1\| hypothetical protein EcolB_01002195 [Escherichia coli B171] gi\|75197612 - gi\|75197612\|ref\|ZP_00707682.1\| hypothetical protein EcolH_01003436 [Escherichia coli HS] gi\|75188471 - gi\|75188471\|ref\|ZP_00701738.1\| hypothetical protein EcolE_01001726 [Escherichia coli E24377A]	147.0	[0..67]	[157..1]
gi\|75231014 - gi\|75231014\|ref\|ZP_00717449.1\| hypothetical protein EcolB7_01000788 [Escherichia coli B7A]	146.0	[0..67]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSRRVIHH GLYFAVLGPL IGVLFLVLYI FFAKEPLVLL VIIQVLPLFL LLSITTGAIP  60
   61 ALLTGVMVAC LPEKIGSQKN YRCLAGGIGG VVITEIYCAV IVHIKGMASS ELFENILSGD 120
  121 SLVVRIIPAL LAGVVMSRII TRLPGLDISC PETDSLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits