YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89109938, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89109938, gi|....

Description	E-value	Query Range	Subject Range
gi\|62129435, gi\|... - gi\|62181802\|ref\|YP_218219.1\| protein-export membrane protein [Salmonella enterica subsp. enterica se...	132.0	[0..1]	[109..66]
gi\|110807041, gi... - gi\|110807041\|ref\|YP_690561.1\| protein export - membrane protein [Shigella flexneri 5 str. 8401], gi\|...	126.0	[0..1]	[110..26]
gi\|26110186, gi\|... - gi\|26249758\|ref\|NP_755798.1\| protein-export membrane protein [Escherichia coli CFT073], gi\|26110186\|... gi\|91212596, gi\|... - gi\|91212596\|ref\|YP_542582.1\| protein-export membrane protein SecG [Escherichia coli UTI89], gi\|91074...	125.0	[0..1]	[110..17]
gi\|82778489, gi\|... - gi\|82778489\|ref\|YP_404838.1\| preprotein translocase subunit SecG [Shigella dysenteriae Sd197], gi\|81...	122.0	[0..1]	[110..1]
gi\|81246998, gi\|... - gi\|82545587\|ref\|YP_409534.1\| preprotein translocase subunit SecG [Shigella boydii Sb227], gi\|8124699... gi\|24053646, gi\|... - gi\|24114464\|ref\|NP_708974.1\| preprotein translocase subunit SecG [Shigella flexneri 2a str. 301], gi... gi\|30042772, gi\|... - gi\|30064513\|ref\|NP_838684.1\| preprotein translocase subunit SecG [Shigella flexneri 2a str. 2457T], ... gi\|162139328 - gi\|162139328\|ref\|YP_690561.2\| preprotein translocase subunit SecG [Shigella flexneri 5 str. 8401]	122.0	[0..1]	[110..1]
lcl\|NC_016856.1_... - [gene=secG] [protein=preprotein translocase subunit SecG] [protein_id=YP_005239469.2] [location=comp... gi\|213645862 - gi\|213645862\|ref\|ZP_03375915.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213865086 - gi\|213865086\|ref\|ZP_03387205.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|214000931 - gi\|214000931\|ref\|ZP_03411666.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|238910086 - gi\|238910086\|ref\|ZP_04653923.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|25306332, gi\|... - gi\|25306332\|pir\|\|AD0902 protein-export membrane protein [imported] - Salmonella enterica subsp. ente... gi\|16762055 - gi\|16762055\|ref\|NP_457672.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|16421850, gi\|... - gi\|16766589\|ref\|NP_462204.1\| preprotein translocase subunit SecG [Salmonella typhimurium LT2], gi\|16... gi\|29139178, gi\|... - gi\|29143544\|ref\|NP_806886.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|205337750, gi... - gi\|205337750\|gb\|EDZ24514.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205348487, gi... - gi\|205348487\|gb\|EDZ35118.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|168463486, gi... - gi\|195633471\|gb\|EDX51885.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|168819641, gi... - gi\|205343277\|gb\|EDZ30041.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205323209, gi... - gi\|205323209\|gb\|EDZ11048.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205331185, gi... - gi\|205331185\|gb\|EDZ17949.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|205333739, gi... - gi\|205333739\|gb\|EDZ20503.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|197289167, gi... - gi\|197289167\|gb\|EDY28536.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. enteric... gi\|213029357 - gi\|213029357\|ref\|ZP_03343804.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213052985 - gi\|213052985\|ref\|ZP_03345863.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213425429 - gi\|213425429\|ref\|ZP_03358179.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|213622801 - gi\|213622801\|ref\|ZP_03375584.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ente... gi\|199605998, gi... - gi\|200388900\|ref\|ZP_03215512.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|204928325, gi... - gi\|204928325\|ref\|ZP_03219525.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|205354194, gi... - gi\|205354194\|ref\|YP_002227995.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|206710344, gi... - gi\|207858541\|ref\|YP_002245192.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|197213750, gi... - gi\|197250047\|ref\|YP_002148217.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|197240846, gi... - gi\|197262591\|ref\|ZP_03162665.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|197364152, gi... - gi\|197364152\|ref\|YP_002143789.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|198245348, gi... - gi\|198245348\|ref\|YP_002217264.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|194446778, gi... - gi\|194446778\|ref\|YP_002042549.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en... gi\|56129479, gi\|... - gi\|56415222\|ref\|YP_152297.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. enteric... gi\|194448171, gi... - gi\|194448171\|ref\|YP_002047320.1\| preprotein translocase subunit SecG [Salmonella enterica subsp. ent... gi\|194458337, gi... - gi\|194471973\|ref\|ZP_03077957.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. ent... gi\|194710167, gi... - gi\|194734665\|ref\|YP_002116240.1\| preprotein translocase, SecG subunit [Salmonella enterica subsp. en...	122.0	[0..1]	[109..1]
gi\|194422227, gi... - gi\|83585814\|ref\|ZP_00924455.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli 101-1]... gi\|170018575, gi... - gi\|170018575\|ref\|YP_001723529.1\| preprotein translocase subunit SecG [Escherichia coli ATCC 8739], g... gi\|188492818, gi... - gi\|75513388\|ref\|ZP_00735812.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli 53638]... gi\|193067481, gi... - gi\|75239258\|ref\|ZP_00723229.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli E11001... gi\|124502023, gi... - gi\|124525919\|ref\|ZP_01697924.1\| preprotein translocase, SecG subunit [Escherichia coli B], gi\|124502... gi\|253979174, gi... - gi\|254289867\|ref\|YP_003055615.1\| protein-export membrane protein [Escherichia coli BL21(DE3)], gi\|25... gi\|190901916, gi... - gi\|75228768\|ref\|ZP_00715377.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli B7A], ... gi\|242378718, gi... - gi\|251786445\|ref\|YP_003000749.1\| hypothetical protein B21_02991 [Escherichia coli BL21], gi\|24237871... gi\|157162658, gi... - gi\|75197124\|ref\|ZP_00707194.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli HS], g... gi\|209920650, gi... - gi\|209920650\|ref\|YP_002294734.1\| preprotein translocase subunit SecG [Escherichia coli SE11], gi\|209... gi\|157155933, gi... - gi\|75187981\|ref\|ZP_00701248.1\| COG1314: Preprotein translocase subunit SecG [Escherichia coli E24377... gi\|253975018, gi... - gi\|254163117\|ref\|YP_003046225.1\| protein-export membrane protein [Escherichia coli B str. REL606], g...	121.0	[0..1]	[110..1]
gi\|25306329 - gi\|25306329\|pir\|\|A85981 protein export membrane protein [imported] - Escherichia coli (strain O157:H... gi\|12517787, gi\|... - gi\|15803715\|ref\|NP_289749.1\| preprotein translocase subunit SecG [Escherichia coli O157:H7 EDL933], ...	121.0	[0..1]	[110..1]
gi\|30142057 - gi\|30142057\|gb\|AAO17817.1\| SecG [Citrobacter rodentium]	119.0	[0..1]	[109..1]
gi\|85058352, gi\|... - gi\|85058352\|ref\|YP_454054.1\| preprotein translocase subunit SecG [Sodalis glossinidius str. 'morsita...	118.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEALLVVFL IVAIGLVGLI MLQQGKGADM GASFGAGASA TLFGSSGSGN FMTRMTALLA  60
   61 TLFFIISLVL GNINSNKTNK GSEWENLSAP AKTEQTQPAA PAKPTSDIPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	2akhX
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits