YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|74313632, gi\|...
Organism:	Shigella sonnei Ss046
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|74313632, gi|....

Description	E-value	Query Range	Subject Range
gi\|26109789, gi\|... - gi\|26249381\|ref\|NP_755421.1\| Hypothetical protein yggL [Escherichia coli CFT073], gi\|26109789\|gb\|AAN... gi\|91073916, gi\|... - gi\|91212342\|ref\|YP_542328.1\| hypothetical protein YggL [Escherichia coli UTI89], gi\|91073916\|gb\|ABE0... gi\|226899427, gi... - gi\|237706387\|ref\|ZP_04536868.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	196.0	[0..1]	[118..1]
gi\|209759968, gi... - pir\|\|F85953 hypothetical protein yggL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|13363307 - gi\|13363307\|dbj\|BAB37258.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|12517508, gi\|... - gi\|15803498\|ref\|NP_289531.1\| hypothetical protein Z4304 [Escherichia coli O157:H7 EDL933], gi\|125175... gi\|13363307 - gi\|13363307\|dbj\|BAB37258.1\| hypothetical protein [Escherichia coli O157:H7]	196.0	[0..1]	[118..1]
gi\|24053368, gi\|... - gi\|24114220\|ref\|NP_708730.1\| hypothetical protein SF2956 [Shigella flexneri 2a str. 301], gi\|2405336... gi\|30064280, gi\|... - gi\|30064280\|ref\|NP_838451.1\| hypothetical protein S3159 [Shigella flexneri 2a str. 2457T], gi\|300425...	192.0	[0..1]	[118..1]
gi\|77974452 - gi\|77974452\|ref\|ZP_00829992.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia fred...	184.0	[0..11]	[118..1]
gi\|77956387 - gi\|77956387\|ref\|ZP_00820490.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|77961508 - gi\|77961508\|ref\|ZP_00825344.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia moll...	181.0	[0..11]	[118..1]
gi\|77976487 - gi\|77976487\|ref\|ZP_00831973.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia inte...	181.0	[0..11]	[118..1]
gi\|197290683, gi... - gi\|197290683\|gb\|EDY30037.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205331704, gi... - gi\|205331704\|gb\|EDZ18468.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194736940, gi... - gi\|194736940\|ref\|YP_002116056.1\| hypothetical protein SeSA_A3282 [Salmonella enterica subsp. enteric... gi\|194458692, gi... - gi\|194472328\|ref\|ZP_03078312.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|25356365, gi\|... - gi\|25356365\|pir\|\|AE0879 conserved hypothetical protein STY3263 [imported] - Salmonella enterica subs... gi\|29139005, gi\|... - gi\|29143371\|ref\|NP_806713.1\| hypothetical protein t3021 [Salmonella enterica subsp. enterica serovar... gi\|56129303, gi\|... - gi\|56415046\|ref\|YP_152121.1\| hypothetical protein SPA2971 [Salmonella enterica subsp. enterica serov... gi\|213850185 - gi\|213850185\|ref\|ZP_03381083.1\| hypothetical protein SentesT_00773 [Salmonella enterica subsp. enter... gi\|213646175 - gi\|213646175\|ref\|ZP_03376228.1\| hypothetical protein SentesTy_01768 [Salmonella enterica subsp. ente... gi\|16761884 - gi\|16761884\|ref\|NP_457501.1\| hypothetical protein STY3263 [Salmonella enterica subsp. enterica serov... gi\|214000589 - gi\|214000589\|ref\|ZP_03411324.1\| hypothetical protein Salmonellentericaenterica_08261 [Salmonella ent... gi\|213977163 - gi\|213977163\|ref\|ZP_03404422.1\| hypothetical protein Salmonellaentericaenterica_22637 [Salmonella en... gi\|213425492 - gi\|213425492\|ref\|ZP_03358242.1\| hypothetical protein SentesTyphi_07362 [Salmonella enterica subsp. e... gi\|213423482 - gi\|213423482\|ref\|ZP_03356463.1\| hypothetical protein Salmonentericaenterica_38872 [Salmonella enteri... gi\|213621618 - gi\|213621618\|ref\|ZP_03374401.1\| hypothetical protein SentesTyp_30472 [Salmonella enterica subsp. ent... gi\|213579926 - gi\|213579926\|ref\|ZP_03361752.1\| hypothetical protein SentesTyph_01433 [Salmonella enterica subsp. en... gi\|204322705, gi... - gi\|204928383\|ref\|ZP_03219583.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197363975, gi... - gi\|197363975\|ref\|YP_002143612.1\| hypothetical protein SSPA2770 [Salmonella enterica subsp. enterica ... gi\|213162851 - gi\|213162851\|ref\|ZP_03348561.1\| hypothetical protein Salmoneentericaenterica_23614 [Salmonella enter... gi\|213021795 - gi\|213021795\|ref\|ZP_03336242.1\| hypothetical protein Salmonelentericaenterica_03295 [Salmonella ente...	180.0	[0..11]	[118..1]
gi\|145209567, gi... - gi\|145597871\|ref\|YP_001161947.1\| hypothetical protein YPDSF_0564 [Yersinia pestis Pestoides F], gi\|1... gi\|186896656, gi... - gi\|186896656\|ref\|YP_001873768.1\| hypothetical protein YPTS_3356 [Yersinia pseudotuberculosis PB1/+],... gi\|170023071, gi... - gi\|170023071\|ref\|YP_001719576.1\| hypothetical protein YPK_0822 [Yersinia pseudotuberculosis YPIII], ... gi\|77633209, gi\|... - gi\|77633209\|ref\|ZP_00795353.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153948134, gi... - gi\|77630198\|ref\|ZP_00792784.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|89102073, gi\|... - gi\|89102073\|ref\|ZP_01174738.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25356363 - pir\|\|AF0116 conserved hypothetical protein YPO0950 [imported] - Yersinia pestis (strain CO92) Q666M6\|Q666M6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|45438098, gi\|... - gi\|45443230\|ref\|NP_994769.1\| hypothetical protein YP_3491 [Yersinia pestis biovar Microtus str. 9100... gi\|166010291, gi... - gi\|166010291\|ref\|ZP_02231189.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|21960281, gi\|... - gi\|22127213\|ref\|NP_670636.1\| hypothetical protein y3337 [Yersinia pestis KIM], gi\|21960281\|gb\|AAM868... gi\|165923189, gi... - gi\|165924989\|ref\|ZP_02220821.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|16121253, gi\|... - gi\|218928121\|ref\|YP_002345996.1\| hypothetical protein YPO0950 [Yersinia pestis CO92], gi\|16121253\|re... gi\|108806311, gi... - gi\|108806311\|ref\|YP_650227.1\| hypothetical protein YPA_0314 [Yersinia pestis Antiqua], gi\|108778224\|... gi\|167400124, gi... - gi\|167400124\|ref\|ZP_02305642.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|51597532, gi\|... - gi\|51597532\|ref\|YP_071723.1\| hypothetical protein YPTB3222 [Yersinia pseudotuberculosis IP 32953], g... gi\|108776956, gi... - gi\|229903771\|ref\|ZP_04518884.1\| hypothetical protein YP516_3575 [Yersinia pestis Nepal516], gi\|22967... gi\|166212795, gi... - gi\|166212795\|ref\|ZP_02238830.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167054319, gi... - gi\|167426716\|ref\|ZP_02318469.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|149290656, gi... - gi\|149367042\|ref\|ZP_01889075.1\| hypothetical protein YPE_2318 [Yersinia pestis CA88-4125], gi\|149290... gi\|167422034, gi... - gi\|167422034\|ref\|ZP_02313787.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229704334, gi... - gi\|229837646\|ref\|ZP_04457808.1\| hypothetical protein YPS_1572 [Yersinia pestis Pestoides A], gi\|2297... gi\|229840870, gi... - gi\|229840870\|ref\|ZP_04461029.1\| hypothetical protein YPH_3221 [Yersinia pestis biovar Orientalis str... gi\|229690879, gi... - gi\|229842569\|ref\|ZP_04462724.1\| hypothetical protein YPF_0910 [Yersinia pestis biovar Orientalis str...	180.0	[0..11]	[118..1]
gi\|198242884, gi... - gi\|198242884\|ref\|YP_002217083.1\| hypothetical protein SeD_A3451 [Salmonella enterica subsp. enterica... gi\|199604815, gi... - gi\|200387717\|ref\|ZP_03214329.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197249785, gi... - gi\|197249785\|ref\|YP_002148023.1\| hypothetical protein SeAg_B3272 [Salmonella enterica subsp. enteric... gi\|238909906 - gi\|238909906\|ref\|ZP_04653743.1\| hypothetical protein SentesTe_02060 [Salmonella enterica subsp. ente... gi\|197240189, gi... - gi\|197261934\|ref\|ZP_03162008.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194444121, gi... - gi\|194444121\|ref\|YP_002042368.1\| hypothetical protein SNSL254_A3356 [Salmonella enterica subsp. ente... gi\|194409794, gi... - gi\|194451490\|ref\|YP_002047097.1\| hypothetical protein SeHA_C3348 [Salmonella enterica subsp. enteric... gi\|16766409, gi\|... - gi\|16766409\|ref\|NP_462024.1\| hypothetical protein STM3108 [Salmonella typhimurium LT2], gi\|16421661\|... gi\|168463705, gi... - gi\|195633654\|gb\|EDX52068.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343491, gi... - gi\|205343491\|gb\|EDZ30255.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205338093, gi... - gi\|205338093\|gb\|EDZ24857.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205347063, gi... - gi\|205347063\|gb\|EDZ33694.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323298, gi... - gi\|205323298\|gb\|EDZ11137.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205331243, gi... - gi\|205331243\|gb\|EDZ18007.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161365437, gi... - gi\|161616073\|ref\|YP_001590038.1\| hypothetical protein SPAB_03874 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yggL] [protein=hypothetical protein] [protein_id=YP_005239255.1] [location=complement(3286607.... gi\|62181619, gi\|... - gi\|62181619\|ref\|YP_218036.1\| hypothetical protein SC3049 [Salmonella enterica subsp. enterica serova... gi\|224584902, gi... - gi\|224584902\|ref\|YP_002638701.1\| hypothetical protein SPC_3174 [Salmonella enterica subsp. enterica ... gi\|205354030, gi... - gi\|205354030\|ref\|YP_002227831.1\| hypothetical protein SG3002 [Salmonella enterica subsp. enterica se... gi\|207858369, gi... - gi\|207858369\|ref\|YP_002245020.1\| hypothetical protein SEN2951 [Salmonella enterica subsp. enterica s...	179.0	[0..11]	[118..1]
gi\|194424160, gi... - gi\|83587643\|ref\|ZP_00926270.1\| COG3171: Uncharacterized protein conserved in bacteria [Escherichia c...	179.0	[0..11]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNVREGEI MAKNRSRRLR KKMHIDEFQE LGFSVAWRFP EGTSEEQIDK TVDDFINEVI  60
   61 EPNKLAFDGS GYLAWEGLIC MQEIGKCTEE HQAIVRKWLE ERKLDEVRTS ELFDVWWD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.30103
Match:	PF04320.5
Description:	No description for PF04320.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits