YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190907173, gi...
Organism:	Escherichia coli F11
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190907173, gi....

Description	E-value	Query Range	Subject Range
gi\|69250181, gi\|... - gi\|69250181\|ref\|ZP_00605117.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Enterococcus faecium ... PLSC_ECOLI - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lyso... gi\|85675821, gi\|... - gi\|89109788\|ref\|AP_003568.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli str. K... EG11377 - 1-acyl-sn-glycerol-3-phosphate acyltransferase / 1-Acyl-n-glycerol-3-phosphate acyltransferase; affe... gi\|124502171, gi... - gi\|124526067\|ref\|ZP_01698072.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferases [Escherichia coli B]... gi\|238902131, gi... - gi\|238902131\|ref\|YP_002927927.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli BW... gi\|194436871, gi... - gi\|83587538\|ref\|ZP_00926165.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|254038187, gi... - gi\|254038187\|ref\|ZP_04872245.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia sp. 1_1_... gi\|157068174, gi... - gi\|75196978\|ref\|ZP_00707048.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|170082561, gi... - gi\|170082561\|ref\|YP_001731881.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli st... gi\|170018728, gi... - gi\|170018728\|ref\|YP_001723682.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli AT... gi\|218706644, gi... - gi\|218706644\|ref\|YP_002414163.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli UM... EG11377 - 1-acyl-sn-glycerol-3-phosphate acyltransferase / 1-Acyl-n-glycerol-3-phosphate acyltransferase; affe...	218.0	[0..1]	[245..1]
gi\|82778370, gi\|... - gi\|82778370\|ref\|YP_404719.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella dysenteriae Sd...	218.0	[0..1]	[245..1]
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	215.0	[0..1]	[244..1]
lcl\|NC_016856.1_... - [gene=plsC] [protein=1-acyl-sn-glycerol-3-phosphate acyltransferase] [protein_id=YP_005239344.1] [lo... gi\|56129371, gi\|... - gi\|56415114\|ref\|YP_152189.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica subsp.... gi\|62129320, gi\|... - gi\|62181687\|ref\|YP_218104.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|197364043, gi... - gi\|197364043\|ref\|YP_002143680.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|198243407, gi... - gi\|198243407\|ref\|YP_002217151.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica... gi\|200389185, gi... - gi\|200389185\|ref\|ZP_03215797.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica ... gi\|205354090, gi... - gi\|205354090\|ref\|YP_002227891.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|194445505, gi... - gi\|194445505\|ref\|YP_002042438.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica... gi\|194469762, gi... - gi\|194469762\|ref\|ZP_03075746.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica ... gi\|197212330, gi... - gi\|197248627\|ref\|YP_002148100.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica... gi\|197265169, gi... - gi\|197265169\|ref\|ZP_03165243.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica ... gi\|205331130, gi... - gi\|205331130\|gb\|EDZ17894.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... gi\|205333919, gi... - gi\|205333919\|gb\|EDZ20683.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... gi\|205348380, gi... - gi\|205348380\|gb\|EDZ35011.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... gi\|168819765, gi... - gi\|205343444\|gb\|EDZ30208.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Salmonella enterica subs... PLSC_SALTY - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium GN=plsC PE=3 SV=1 gi\|161365525, gi... - gi\|161616161\|ref\|YP_001590126.1\| hypothetical protein SPAB_03963 [Salmonella enterica subsp. enteric... gi\|213982569 - gi\|213982569\|ref\|ZP_03409828.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|214001851 - gi\|214001851\|ref\|ZP_03412586.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|224584973, gi... - gi\|224584973\|ref\|YP_002638772.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|207858432, gi... - gi\|207858432\|ref\|YP_002245083.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica su... gi\|213618677 - gi\|213618677\|ref\|ZP_03372503.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|213647439 - gi\|213647439\|ref\|ZP_03377492.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... gi\|213859684 - gi\|213859684\|ref\|ZP_03385388.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... PLSC_SALTY - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium GN=plsC PE=3 SV=1 gi\|238909974 - gi\|238909974\|ref\|ZP_04653811.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica sub... PLSC_SALTI - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhi GN=plsC PE=3 SV=1 PLSC_SALTY - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... PLSC_SALTI - 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Salmonella typhi GN=plsC PE=3 SV=1 gi\|29143436, gi\|... - gi\|29143436\|ref\|NP_806778.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica subsp.... gi\|16761949 - gi\|16761949\|ref\|NP_457566.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Salmonella enterica subsp....	215.0	[0..1]	[245..1]
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	209.0	[0..1]	[238..1]
gi\|49609831, gi\|... - gi\|50119305\|ref\|YP_048472.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Pectobacterium atrosept...	209.0	[0..1]	[244..1]
gi\|59479110, gi\|... - gi\|59711009\|ref\|YP_203785.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio fischeri ES114],...	209.0	[0..1]	[242..12]
gi\|113460644, gi... - gi\|23468006\|ref\|ZP_00123580.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus ...	208.0	[0..1]	[239..1]
gi\|46156593, gi\|... - gi\|46156593\|ref\|ZP_00132415.2\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Haemophilus ...	208.0	[0..1]	[239..1]
gi\|12720314, gi\|... - gi\|15601968\|ref\|NP_245040.1\| hypothetical protein PM0103 [Pasteurella multocida subsp. multocida str...	207.0	[0..1]	[239..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIFRLIIT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPAD  60
   61 AESYGNAIYI ANHQNNYDMV TASNIVQPPT VTVGKKSLLW IPFFGQLYWL TGNLLIDRNN 120
  121 RTKAHGTIAE VVNHFKKRRI SIWMFPEGTR SRGRGLLPFK TGAFHAAIAA GVPIIPVCVS 180
  181 TTSNKINLNR LHNGLVIVEM LPPIDVSQYG KDQVRELAAH CRSIMEQKIA ELDKEVAERE 240
  241 AAGKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.221849
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits