YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|82545481, gi\|...
Organism:	Shigella boydii Sb227
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|82545481, gi|....

Description	E-value	Query Range	Subject Range
gi\|75212490, gi\|... - gi\|75212490\|ref\|ZP_00712514.1\| hypothetical protein EcolB_01000577 [Escherichia coli B171], gi\|19442...	204.0	[0..1]	[135..1]
gi\|218353223, gi... - gi\|218696491\|ref\|YP_002404158.1\| hypothetical protein EC55989_3182 [Escherichia coli 55989], gi\|2183... gi\|209913609, gi... - gi\|209920350\|ref\|YP_002294434.1\| hypothetical protein ECSE_3159 [Escherichia coli SE11], gi\|20991360... gi\|192930823, gi... - gi\|75258495\|ref\|ZP_00729917.1\| hypothetical protein EcolE2_01001725 [Escherichia coli E22], gi\|19306... gi\|190903991, gi... - gi\|75230869\|ref\|ZP_00717327.1\| hypothetical protein EcolB7_01001011 [Escherichia coli B7A], gi\|19116...	201.0	[0..1]	[135..1]
gi\|110616347, gi... - gi\|110806799\|ref\|YP_690319.1\| hypothetical protein SFV_2944 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114150, gi\|... - gi\|24114150\|ref\|NP_708660.1\| hypothetical protein SF2882 [Shigella flexneri 2a str. 301], gi\|2405329... gi\|30042465, gi\|... - gi\|30064208\|ref\|NP_838379.1\| hypothetical protein S3081 [Shigella flexneri 2a str. 2457T], gi\|300424...	200.0	[0..1]	[135..1]
gi\|26109719, gi\|... - gi\|26249311\|ref\|NP_755351.1\| hypothetical protein c3476 [Escherichia coli CFT073], gi\|26109719\|gb\|AA... gi\|209760560, gi... - pir\|\|D85945 hypothetical protein Z4234 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12517424, gi\|... - gi\|15803432\|ref\|NP_289465.1\| hypothetical protein Z4234 [Escherichia coli O157:H7 EDL933], gi\|125174... gi\|13363240, gi\|... - gi\|15833022\|ref\|NP_311795.1\| hypothetical protein ECs3768 [Escherichia coli O157:H7], gi\|13363240\|db... gi\|218701605, gi... - gi\|218701605\|ref\|YP_002409234.1\| hypothetical protein ECIAI39_3312 [Escherichia coli IAI39], gi\|2183... gi\|215488196, gi... - gi\|215488196\|ref\|YP_002330627.1\| hypothetical protein E2348C_3149 [Escherichia coli O127:H6 str. E23... gi\|217327745, gi... - gi\|217327745\|ref\|ZP_03443828.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218366658, gi... - gi\|218559889\|ref\|YP_002392802.1\| hypothetical protein ECS88_3176 [Escherichia coli S88], gi\|21836665... gi\|218428585, gi... - gi\|218691021\|ref\|YP_002399233.1\| hypothetical protein ECED1_3355 [Escherichia coli ED1a], gi\|2184285... gi\|170521100, gi... - gi\|170683382\|ref\|YP_001745049.1\| hypothetical protein EcSMS35_3029 [Escherichia coli SMS-3-5], gi\|17... gi\|195936514 - gi\|195936514\|ref\|ZP_03081896.1\| hypothetical protein EscherichcoliO157_08632 [Escherichia coli O157:... gi\|91212274, gi\|... - gi\|91212274\|ref\|YP_542260.1\| hypothetical protein UTI89_C3281 [Escherichia coli UTI89], gi\|91073848\|... gi\|208814232, gi... - gi\|208814232\|ref\|ZP_03255561.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|13363240, gi\|... - gi\|15833022\|ref\|NP_311795.1\| hypothetical protein ECs3768 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208740940, gi... - gi\|208820817\|ref\|ZP_03261137.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|168766889, gi... - gi\|189363733\|gb\|EDU82152.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168778909, gi... - gi\|189003222\|gb\|EDU72208.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|227834714, gi... - gi\|227888445\|ref\|ZP_04006250.1\| inner membrane protein [Escherichia coli 83972], gi\|227834714\|gb\|EEJ... gi\|189374033, gi... - gi\|189374033\|gb\|EDU92449.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168800029, gi... - gi\|189377646\|gb\|EDU96062.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168747625, gi... - gi\|188017967\|gb\|EDU56089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168753834, gi... - gi\|189358379\|gb\|EDU76798.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254037940, gi... - gi\|254037940\|ref\|ZP_04871998.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683956... gi\|168760024, gi... - gi\|189369310\|gb\|EDU87726.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|254794846, gi... - gi\|254794846\|ref\|YP_003079683.1\| hypothetical protein ECSP_3864 [Escherichia coli O157:H7 str. TW143...	199.0	[0..1]	[135..1]
gi\|75239240, gi\|... - gi\|75239240\|ref\|ZP_00723213.1\| hypothetical protein EcolF_01003145 [Escherichia coli F11], gi\|191173... gi\|110643044, gi... - gi\|110643044\|ref\|YP_670774.1\| hypothetical protein ECP_2889 [Escherichia coli 536], gi\|110344636\|gb\|...	198.0	[0..1]	[135..1]
gi\|81242486, gi\|... - gi\|82778338\|ref\|YP_404687.1\| hypothetical protein SDY_3186 [Shigella dysenteriae Sd197], gi\|81242486...	196.0	[0..1]	[135..1]
gi\|62129189, gi\|... - gi\|62181556\|ref\|YP_217973.1\| hypothetical protein SC2986 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=ygfX] [protein=putative inner membrane protein] [protein_id=YP_005239181.1] [location=compleme... gi\|206710112, gi... - gi\|207858309\|ref\|YP_002244960.1\| hypothetical protein SEN2889 [Salmonella enterica subsp. enterica s... gi\|224584835, gi... - gi\|224584835\|ref\|YP_002638633.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|197939731, gi... - gi\|198245215\|ref\|YP_002217023.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205273751, gi... - gi\|205353970\|ref\|YP_002227771.1\| hypothetical protein SG2941 [Salmonella enterica subsp. enterica se... gi\|238909845 - gi\|238909845\|ref\|ZP_04653682.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|197249800, gi... - gi\|197249800\|ref\|YP_002147958.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|197262800, gi... - gi\|197262800\|ref\|ZP_03162874.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|194472287, gi... - gi\|194472287\|ref\|ZP_03078271.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|194712481, gi... - gi\|194736979\|ref\|YP_002115995.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|168463786, gi... - gi\|195633635\|gb\|EDX52049.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|194446572, gi... - gi\|194446572\|ref\|YP_002042297.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|168231151, gi... - gi\|205334585\|gb\|EDZ21349.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|205349207, gi... - gi\|205349207\|gb\|EDZ35838.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|205324745, gi... - gi\|205324745\|gb\|EDZ12584.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|16766347, gi\|... - gi\|16766347\|ref\|NP_461962.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164215... gi\|205327967, gi... - gi\|205327967\|gb\|EDZ14731.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|161365357, gi... - gi\|161615993\|ref\|YP_001589958.1\| hypothetical protein SPAB_03793 [Salmonella enterica subsp. enteric...	193.0	[0..1]	[131..1]
gi\|108776904, gi... - gi\|229903712\|ref\|ZP_04518825.1\| hypothetical protein YP516_3511 [Yersinia pestis Nepal516], gi\|22967... gi\|108806369, gi... - gi\|108806369\|ref\|YP_650285.1\| hypothetical protein YPA_0372 [Yersinia pestis Antiqua], gi\|108778282\|... gi\|229704271, gi... - gi\|229837583\|ref\|ZP_04457745.1\| hypothetical protein YPS_1507 [Yersinia pestis Pestoides A], gi\|2297... gi\|22127157, gi\|... - gi\|22127157\|ref\|NP_670580.1\| hypothetical protein y3281 [Yersinia pestis KIM], gi\|21960219\|gb\|AAM868... gi\|167467688 - gi\|167467688\|ref\|ZP_02332392.1\| hypothetical protein YpesF_07274 [Yersinia pestis FV-1] gi\|25359008 - pir\|\|AB0110 conserved hypothetical protein YPO0896a [imported] - Yersinia pestis (strain CO92) gi\|51590765, gi\|... - gi\|51597483\|ref\|YP_071674.1\| hypothetical protein YPTB3172 [Yersinia pseudotuberculosis IP 32953], g... gi\|229697172, gi... - gi\|229840806\|ref\|ZP_04460965.1\| hypothetical protein YPH_3155 [Yersinia pestis biovar Orientalis str... gi\|45443328, gi\|... - gi\|45443328\|ref\|NP_994867.1\| hypothetical protein YP_3593 [Yersinia pestis biovar Microtus str. 9100... gi\|229690945, gi... - gi\|229842635\|ref\|ZP_04462790.1\| hypothetical protein YPF_0978 [Yersinia pestis biovar Orientalis str... gi\|115346681, gi... - gi\|218928070\|ref\|YP_002345945.1\| hypothetical protein YPO0896a [Yersinia pestis CO92], gi\|16121202\|r... Q666S4\|Q666S4_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|150260092, gi... - gi\|150260092\|ref\|ZP_01916820.1\| hypothetical protein YPE_2370 [Yersinia pestis CA88-4125], gi\|149289... gi\|145597925, gi... - gi\|145597925\|ref\|YP_001162001.1\| hypothetical protein YPDSF_0619 [Yersinia pestis Pestoides F], gi\|1...	183.0	[0..1]	[128..1]
gi\|36786862, gi\|... - gi\|37527427\|ref\|NP_930771.1\| hypothetical protein plu3554 [Photorhabdus luminescens subsp. laumondii...	178.0	[0..1]	[130..1]
gi\|197363921, gi... - gi\|197363921\|ref\|YP_002143558.1\| hypothetical protein SSPA2716 [Salmonella enterica subsp. enterica ... gi\|56414992, gi\|... - gi\|56414992\|ref\|YP_152067.1\| hypothetical protein SPA2914 [Salmonella enterica subsp. enterica serov...	168.0	[0..19]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLWQSDLRV SWRAQWLSLL IHGLVAAVIL LMPWPLSYTP LWMVLLSLVV FDCVRSQRRI  60
   61 NARQGEIRLL MDGRLRWQGQ EWSIVKAPWM IKSGMMLRLR SDGGKRQHLW LAADSMDEAE 120
  121 WRDLRRILLQ QETQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	111.638272
Match:	PF07254.3
Description:	No description for PF07254.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.505	N/A	N/A	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View	Download	0.476	N/A	N/A	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.435	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.413	N/A	N/A	d.214.1	Hypothetical protein MTH1880
View	Download	0.405	N/A	N/A	a.4.2	Methylated DNA-protein cysteine methyltransferase, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits