YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75187537
Organism:	Escherichia coli E24377A
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75187537.

Description	E-value	Query Range	Subject Range
gi\|24053224, gi\|... - gi\|24114093\|ref\|NP_708603.1\| hypothetical protein SF2823 [Shigella flexneri 2a str. 301], gi\|2405322... gi\|30042410, gi\|... - gi\|30064154\|ref\|NP_838325.1\| hypothetical protein S3018 [Shigella flexneri 2a str. 2457T], gi\|300424...	112.0	[0..1]	[76..1]
gi\|110344542, gi... - gi\|110642950\|ref\|YP_670680.1\| putative lipoprotein [Escherichia coli 536], gi\|110344542\|gb\|ABG70779.... gi\|85675628, gi\|... - gi\|89109595\|ref\|AP_003375.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13081 - DUF903 family verified lipoprotein / DUF903 family verified lipoprotein, function unknown gi\|188495026, gi... - gi\|188495026\|ref\|ZP_03002296.1\| putative lipoprotein [Escherichia coli 53638], gi\|188490225\|gb\|EDU65... gi\|188025103, gi... - gi\|188025103\|ref\|ZP_02776048.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|1880... gi\|187776434, gi... - gi\|187776434\|ref\|ZP_02802675.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|1877... gi\|187428975, gi... - gi\|187731983\|ref\|YP_001881452.1\| putative lipoprotein [Shigella boydii CDC 3083-94], gi\|187428975\|gb... gi\|189365391, gi... - gi\|189404466\|ref\|ZP_02789647.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|1893... gi\|189402896, gi... - gi\|189402896\|ref\|ZP_02791789.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|1893... gi\|189402553, gi... - gi\|189402553\|ref\|ZP_02783201.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|1893... gi\|189003436, gi... - gi\|189009969\|ref\|ZP_02803810.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|1890... gi\|170520088, gi... - gi\|170682370\|ref\|YP_001744974.1\| putative lipoprotein [Escherichia coli SMS-3-5], gi\|170520088\|gb\|AC... gi\|170082380, gi... - gi\|170082380\|ref\|YP_001731700.1\| hypothetical protein ECDH10B_2979 [Escherichia coli str. K-12 subst... gi\|157067943, gi... - gi\|157162263\|ref\|YP_001459581.1\| putative lipoprotein [Escherichia coli HS], gi\|157067943\|gb\|ABV0719... gi\|170018945, gi... - gi\|170018945\|ref\|YP_001723899.1\| hypothetical protein EcolC_0903 [Escherichia coli ATCC 8739], gi\|16... gi\|157157648, gi... - gi\|157157648\|ref\|YP_001464133.1\| putative lipoprotein [Escherichia coli E24377A], gi\|157079678\|gb\|AB... gi\|209913519, gi... - gi\|209920260\|ref\|YP_002294344.1\| hypothetical protein ECSE_3069 [Escherichia coli SE11], gi\|20991351... gi\|209400704, gi... - gi\|209400704\|ref\|YP_002272275.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208738376, gi... - gi\|208818253\|ref\|ZP_03258573.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208812391, gi... - gi\|208812391\|ref\|ZP_03253720.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|218362128, gi... - gi\|218555360\|ref\|YP_002388273.1\| hypothetical protein ECIAI1_2919 [Escherichia coli IAI1], gi\|218362... gi\|218355220, gi... - gi\|218547679\|ref\|YP_002381470.1\| hypothetical protein EFER_0258 [Escherichia fergusonii ATCC 35469],... gi\|217327605, gi... - gi\|217327605\|ref\|ZP_03443688.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|215266198, gi... - gi\|215488126\|ref\|YP_002330557.1\| hypothetical protein E2348C_3076 [Escherichia coli O127:H6 str. E23... EG13081 - DUF903 family verified lipoprotein / DUF903 family verified lipoprotein, function unknown gi\|193065103, gi... - gi\|193065103\|ref\|ZP_03046177.1\| putative lipoprotein [Escherichia coli E22], gi\|192927234\|gb\|EDV8185... gi\|190908457, gi... - gi\|191171157\|ref\|ZP_03032707.1\| putative lipoprotein [Escherichia coli F11], gi\|190908457\|gb\|EDV6804... gi\|189406159, gi... - gi\|189406159\|ref\|ZP_02826680.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|18937... gi\|251786088, gi... - gi\|251786088\|ref\|YP_003000392.1\| hypothetical protein B21_02621 [Escherichia coli BL21], gi\|24237836... gi\|189372182, gi... - gi\|189405064\|ref\|ZP_02813080.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|18937... gi\|238862915, gi... - gi\|238901947\|ref\|YP_002927743.1\| hypothetical protein BWG_2547 [Escherichia coli BW2952], gi\|2388629... gi\|208727097, gi... - gi\|208807296\|ref\|ZP_03249633.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|253974641, gi... - gi\|254162740\|ref\|YP_003045848.1\| hypothetical protein ECB_02660 [Escherichia coli B str. REL606], gi... gi\|195936413 - gi\|195936413\|ref\|ZP_03081795.1\| hypothetical protein EscherichcoliO157_08107 [Escherichia coli O157:... gi\|254289499, gi... - gi\|254289499\|ref\|YP_003055247.1\| hypothetical protein ECD_02660 [Escherichia coli BL21(DE3)], gi\|253... gi\|194421195, gi... - gi\|194439858\|ref\|ZP_03071922.1\| putative lipoprotein [Escherichia coli 101-1], gi\|194421195\|gb\|EDX37... gi\|194426465, gi... - gi\|194426465\|ref\|ZP_03059020.1\| putative lipoprotein [Escherichia coli B171], gi\|194415773\|gb\|EDX320... gi\|254594150, gi... - gi\|254794750\|ref\|YP_003079587.1\| hypothetical protein ECSP_3761 [Escherichia coli O157:H7 str. TW143... YGDI_ECOL6 - Uncharacterized lipoprotein ygdI OS=Escherichia coli O6 GN=ygdI PE=4 SV=1 YGDI_ECOL6 - Uncharacterized lipoprotein YgdI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=y... YGDI_ECOLI - Hypothetical lipoprotein ygdI precursor - Escherichia coli gi\|218701526, gi... - gi\|218701526\|ref\|YP_002409155.1\| hypothetical protein ECIAI39_3231 [Escherichia coli IAI39], gi\|2183... gi\|218696408, gi... - gi\|218696408\|ref\|YP_002404075.1\| hypothetical protein EC55989_3088 [Escherichia coli 55989], gi\|2183... gi\|218428497, gi... - gi\|218690933\|ref\|YP_002399145.1\| hypothetical protein ECED1_3263 [Escherichia coli ED1a], gi\|2184284... gi\|218366566, gi... - gi\|218559797\|ref\|YP_002392710.1\| hypothetical protein ECS88_3078 [Escherichia coli S88], gi\|21836656... gi\|218433403, gi... - gi\|218706306\|ref\|YP_002413825.1\| hypothetical protein ECUMN_3139 [Escherichia coli UMN026], gi\|21843...	112.0	[0..2]	[76..1]
gi\|110806749, gi... - gi\|110806749\|ref\|YP_690269.1\| hypothetical protein SFV_2888 [Shigella flexneri 5 str. 8401], gi\|1106...	110.0	[0..2]	[76..1]
gi\|15803331, gi\|... - gi\|15803331\|ref\|NP_289364.1\| hypothetical protein Z4126 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|25500318 - pir\|\|G85932 hypothetical protein Z4126 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	110.0	[0..1]	[76..1]
gi\|214003289 - gi\|214003289\|ref\|ZP_03414024.1\| hypothetical protein Salmonellentericaenterica_24731 [Salmonella ent... gi\|224469300, gi... - gi\|224584773\|ref\|YP_002638571.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|213583189 - gi\|213583189\|ref\|ZP_03365015.1\| hypothetical protein SentesTyph_19063 [Salmonella enterica subsp. en... gi\|213622673 - gi\|213622673\|ref\|ZP_03375456.1\| hypothetical protein SentesTyp_36251 [Salmonella enterica subsp. ent... gi\|213649826 - gi\|213649826\|ref\|ZP_03379879.1\| hypothetical protein SentesTy_22619 [Salmonella enterica subsp. ente... gi\|213857810 - gi\|213857810\|ref\|ZP_03384781.1\| hypothetical protein SentesT_22105 [Salmonella enterica subsp. enter... gi\|213028691 - gi\|213028691\|ref\|ZP_03343138.1\| hypothetical protein Salmonelentericaenterica_43218 [Salmonella ente... gi\|213052970 - gi\|213052970\|ref\|ZP_03345848.1\| hypothetical protein Salmoneentericaenterica_08653 [Salmonella enter... gi\|213416506 - gi\|213416506\|ref\|ZP_03349650.1\| hypothetical protein Salmonentericaenterica_00324 [Salmonella enteri... gi\|213424887 - gi\|213424887\|ref\|ZP_03357637.1\| hypothetical protein SentesTyphi_03776 [Salmonella enterica subsp. e... gi\|205337967, gi... - gi\|205359147\|ref\|ZP_02667683.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar He... gi\|205342875, gi... - gi\|205359797\|ref\|ZP_02832291.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar We... gi\|205360489, gi... - gi\|205360489\|ref\|ZP_02683839.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ha... gi\|207858248, gi... - gi\|207858248\|ref\|YP_002244899.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|29138878, gi\|... - gi\|29143245\|ref\|NP_806587.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2... gi\|16761761 - gi\|16761761\|ref\|NP_457378.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. CT1... gi\|16504063, gi\|... - gi\|25513393\|pir\|\|AI0863 probable lipoprotein [imported] - Salmonella enterica subsp. enterica serova... gi\|16766287, gi\|... - gi\|16766287\|ref\|NP_461902.1\| putative lipoprotein [Salmonella typhimurium LT2], gi\|16421533\|gb\|AAL21... gi\|238909762 - gi\|238909762\|ref\|ZP_04653599.1\| hypothetical protein SentesTe_01330 [Salmonella enterica subsp. ente... gi\|205273706, gi... - gi\|205353925\|ref\|YP_002227726.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|205324812, gi... - gi\|205357000\|ref\|ZP_02343901.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|205328456, gi... - gi\|205357972\|ref\|ZP_02574575.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar 4,... gi\|205358414, gi... - gi\|205358414\|ref\|ZP_02656136.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ke... gi\|197095337, gi... - gi\|197363860\|ref\|YP_002143497.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|198243268, gi... - gi\|198243268\|ref\|YP_002216959.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar D... gi\|199604049, gi... - gi\|200386951\|ref\|ZP_03213563.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Vi... gi\|204322715, gi... - gi\|204928393\|ref\|ZP_03219593.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ja... gi\|195633650, gi... - gi\|195873625\|ref\|ZP_02697778.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ne... gi\|197251729, gi... - gi\|197251729\|ref\|YP_002147895.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar A... gi\|197242035, gi... - gi\|197263780\|ref\|ZP_03163854.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|197300785, gi... - gi\|197300785\|ref\|ZP_02661093.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sc... gi\|194404307, gi... - gi\|194445644\|ref\|YP_002042235.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar N... gi\|62181493, gi\|... - gi\|62181493\|ref\|YP_217910.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Chole... gi\|194450696, gi... - gi\|194450696\|ref\|YP_002046955.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar H... lcl\|NC_016856.1_... - [gene=ygdI] [protein=putative lipoprotein] [protein_id=YP_005239104.1] [location=complement(3155345.... gi\|56414932, gi\|... - gi\|56414932\|ref\|YP_152007.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A st... gi\|194469247, gi... - gi\|194469247\|ref\|ZP_03075231.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ke... gi\|194736466, gi... - gi\|194736466\|ref\|YP_002115936.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar S...	109.0	[0..2]	[75..1]
gi\|77460184, gi\|... - gi\|77460184\|ref\|YP_349691.1\| hypothetical protein Pfl01_3963 [Pseudomonas fluorescens Pf0-1], gi\|773...	106.0	[0..1]	[74..1]
tr\|Q883K7\|Q883K7... - Lipoprotein, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_2350 PE=4 SV=1 gi\|28852789, gi\|... - gi\|28869547\|ref\|NP_792166.1\| putative lipoprotein [Pseudomonas syringae pv. tomato str. DC3000], gi\|... tr\|F3GCT7\|F3GCT7... - Uncharacterized protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_21987 PE=4 SV=1 gi\|63256081, gi\|... - gi\|66045374\|ref\|YP_235215.1\| hypothetical protein Psyr_2134 [Pseudomonas syringae pv. syringae B728a... gi\|213924694, gi... - gi\|213970523\|ref\|ZP_03398650.1\| hypothetical protein PSPTOT1_4001 [Pseudomonas syringae pv. tomato T...	100.0	[0..1]	[74..1]
gi\|71736733, gi\|... - gi\|71736733\|ref\|YP_274328.1\| putative lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|...	100.0	[0..1]	[74..1]
gi\|95112455, gi\|... - gi\|95112455\|emb\|CAK17182.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047834... gi\|95112455 - gi\|95112455\|emb\|CAK17182.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	100.0	[0..2]	[74..1]
gi\|238909785 - gi\|238909785\|ref\|ZP_04653622.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar Te... lcl\|NC_016856.1_... - [gene=ygdR] [protein=putative peptide transport protein] [protein_id=YP_005239135.1] [location=31849... gi\|16421557, gi\|... - gi\|16766309\|ref\|NP_461924.1\| putative peptide transport protein [Salmonella typhimurium LT2], gi\|164... gi\|168261838, gi... - gi\|205349040\|gb\|EDZ35671.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|195633569, gi... - gi\|195633569\|gb\|EDX51983.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|197290796, gi... - gi\|197290796\|gb\|EDY30150.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205338169, gi... - gi\|205338169\|gb\|EDZ24933.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|167993508, gi... - gi\|205328476\|gb\|EDZ15240.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|168231106, gi... - gi\|205334525\|gb\|EDZ21289.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|161365309, gi... - gi\|161615945\|ref\|YP_001589910.1\| hypothetical protein SPAB_03742 [Salmonella enterica subsp. enteric... gi\|167550116, gi... - gi\|205324706\|gb\|EDZ12545.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|207858270, gi... - gi\|207858270\|ref\|YP_002244921.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|224469323, gi... - gi\|224584796\|ref\|YP_002638594.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|204928254, gi... - gi\|204928254\|ref\|ZP_03219454.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205273728, gi... - gi\|205353947\|ref\|YP_002227748.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|198242598, gi... - gi\|198242598\|ref\|YP_002216981.1\| hypothetical protein SeD_A3335 [Salmonella enterica subsp. enterica... gi\|200387062, gi... - gi\|200387062\|ref\|ZP_03213674.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197240057, gi... - gi\|197261802\|ref\|ZP_03161876.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197095360, gi... - gi\|197363883\|ref\|YP_002143520.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|194738056, gi... - gi\|194738056\|ref\|YP_002115958.1\| hypothetical protein SeSA_A3172 [Salmonella enterica subsp. enteric... gi\|197211878, gi... - gi\|197248175\|ref\|YP_002147916.1\| hypothetical protein SeAg_B3154 [Salmonella enterica subsp. enteric... gi\|62129149, gi\|... - gi\|62181516\|ref\|YP_217933.1\| POT family peptide transport protein [Salmonella enterica subsp. enteri... gi\|194449686, gi... - gi\|194449686\|ref\|YP_002046977.1\| hypothetical protein SeHA_C3220 [Salmonella enterica subsp. enteric... gi\|194456262, gi... - gi\|194469898\|ref\|ZP_03075882.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205342922, gi... - gi\|205342922\|gb\|EDZ29686.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|56414954, gi\|... - gi\|56414954\|ref\|YP_152029.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A st... gi\|194401264, gi... - gi\|194442601\|ref\|YP_002042257.1\| hypothetical protein SNSL254_A3235 [Salmonella enterica subsp. ente...	99.0	[0..2]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKTAAIIS ACMLTFALSA CSGSNYVMHT NDGRTIVSDG KPQTDNDTGM ISYKDANGNK  60
   61 QQINRTDVKE MVELDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2ra2A
Description:	No description for 2ra2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits