YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_SHIDS
Organism:	Shigella dysenteriae Sd197
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_SHIDS.

Description	E-value	Query Range	Subject Range
gi\|62181253, gi\|... - gi\|62181253\|ref\|YP_217670.1\| molecular chaparone; heat shock protein [Salmonella enterica subsp. ent...	191.0	[0..1]	[196..65]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	188.0	[0..1]	[195..93]
GRPE_SHIF8 - Protein GrpE OS=Shigella flexneri serotype 5b (strain 8401) GN=grpE PE=3 SV=1	187.0	[0..1]	[197..1]
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	186.0	[0..34]	[196..44]
EG10416 - heat shock protein / Nucleotide exchange factor for the DnaKJ chaperone; heat shock protein; mutant ... GRPE_ECOLI - Protein grpE (HSP-70 cofactor) (Heat shock protein B25.3) (HSP24) - Escherichia coli gi\|89109414, gi\|... - gi\|89109414\|ref\|AP_003194.1\| heat shock protein [Escherichia coli str. K-12 substr. W3110], gi\|18000... GRPE_ECOBW - Protein GrpE OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=grpE PE=1 SV=1 GRPE_ECODH - Protein GrpE OS=Escherichia coli (strain K12 / DH10B) GN=grpE PE=3 SV=1 EG10416 - heat shock protein / Nucleotide exchange factor for the DnaKJ chaperone; heat shock protein; mutant ...	186.0	[0..1]	[197..1]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	185.0	[0..14]	[197..52]
gi\|75210855, gi\|... - gi\|75210855\|ref\|ZP_00710979.1\| COG0576: Molecular chaperone GrpE (heat shock protein) [Escherichia c... GRPE_ECO24 - Protein GrpE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=grpE PE=3 SV=1	185.0	[0..1]	[196..1]
GRPE_ECOUT - Protein GrpE OS=Escherichia coli (strain UTI89 / UPEC) GN=grpE PE=3 SV=1 GRPE_ECO45 - Protein GrpE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=grpE PE=3 SV=1 GRPE_ECO81 - Protein GrpE OS=Escherichia coli O81 (strain ED1a) GN=grpE PE=3 SV=1 gi\|237706799, gi... - gi\|237706799\|ref\|ZP_04537280.1\| grpE [Escherichia sp. 3_2_53FAA], gi\|226899839\|gb\|EEH86098.1\| grpE [...	185.0	[0..1]	[196..1]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	185.0	[0..1]	[195..1]
gi\|90416141, gi\|... - gi\|90416141\|ref\|ZP_01224073.1\| heat shock protein GrpE [marine gamma proteobacterium HTCC2207], gi\|9... gi\|90416141\|ref\|... - heat shock protein GrpE [marine gamma proteobacterium HTCC2207]	184.0	[0..3]	[195..2]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKEQKTPE GQAPEEIIMD QHEEIEAVEP EASAEQVDPR DEKIANLEAQ LAEAQTRERD  60
   61 GILRVKAEME NLRRRTELDI EKAHKFALEK FINELLPVID SLDRALEVAD KANPDMSAMV 120
  121 EGIELTLKSM LDVVRKFGVE VIAETNVPLD PNVHQAIAMV ESDDVAPGNV LGIMQKGYTL 180
  181 NGRTIRAAMV TVAKAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.154902
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits