YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75258029, gi\|...
Organism:	Escherichia coli E22
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75258029, gi|....

Description	E-value	Query Range	Subject Range
gi\|120325072, gi... - gi\|77954892\|ref\|ZP_00819276.1\| Signal recognition particle protein [Marinobacter aquaeolei VT8], gi\|...	478.0	[0..1]	[452..30]
gi\|110806722, gi... - gi\|110806722\|ref\|YP_690242.1\| signal recognition particle protein [Shigella flexneri 5 str. 8401], g...	474.0	[0..1]	[453..1]
gi\|24113948, gi\|... - gi\|24113948\|ref\|NP_708458.1\| signal recognition particle protein [Shigella flexneri 2a str. 301], gi... gi\|30042265, gi\|... - gi\|30064009\|ref\|NP_838180.1\| signal recognition particle protein [Shigella flexneri 2a str. 2457T], ...	474.0	[0..1]	[453..1]
gi\|199605327, gi... - gi\|200388229\|ref\|ZP_03214841.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|197937627, gi... - gi\|198243111\|ref\|YP_002216687.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|197241849, gi... - gi\|197263594\|ref\|ZP_03163668.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|197247718, gi... - gi\|197247718\|ref\|YP_002147614.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|213424862 - gi\|213424862\|ref\|ZP_03357612.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|213161442 - gi\|213161442\|ref\|ZP_03347152.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|206709828, gi... - gi\|207858025\|ref\|YP_002244676.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|204929456, gi... - gi\|204929456\|ref\|ZP_03220530.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|168823045, gi... - gi\|205340654\|gb\|EDZ27418.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|195633364, gi... - gi\|195633364\|gb\|EDX51778.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|168262150, gi... - gi\|205349192\|gb\|EDZ35823.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|168244700, gi... - gi\|205336482\|gb\|EDZ23246.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|194736625, gi... - gi\|194736625\|ref\|YP_002115688.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|194456913, gi... - gi\|194470549\|ref\|ZP_03076533.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|194405923, gi... - gi\|194447619\|ref\|YP_002046682.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|194402560, gi... - gi\|194443897\|ref\|YP_002041940.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|62128881, gi\|... - gi\|62181248\|ref\|YP_217665.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|213999735 - gi\|213999735\|ref\|ZP_03410470.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|213647495 - gi\|213647495\|ref\|ZP_03377548.1\| signal recognition particle protein [Salmonella enterica subsp. ente... gi\|213622617 - gi\|213622617\|ref\|ZP_03375400.1\| signal recognition particle protein [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ffh] [protein=signal recognition particle protein] [protein_id=YP_005238801.1] [location=compl... gi\|161615610, gi... - gi\|161615610\|ref\|YP_001589575.1\| signal recognition particle protein [Salmonella enterica subsp. ent... gi\|168239447, gi... - gi\|197287864\|gb\|EDY27252.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|168234200, gi... - gi\|205331826\|gb\|EDZ18590.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|167992457, gi... - gi\|205329303\|gb\|EDZ16067.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|167553522, gi... - gi\|205322062\|gb\|EDZ09901.1\| signal recognition particle protein [Salmonella enterica subsp. enterica... gi\|29143001, gi\|... - gi\|29143001\|ref\|NP_806343.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|16761530 - gi\|16761530\|ref\|NP_457147.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|25294415, gi\|... - gi\|25294415\|pir\|\|AI0833 signal recognition particle protein [imported] - Salmonella enterica subsp. ... gi\|16765992, gi\|... - gi\|16765992\|ref\|NP_461607.1\| signal recognition particle protein [Salmonella typhimurium LT2], gi\|16...	471.0	[0..1]	[453..1]
gi\|56414642, gi\|... - gi\|56414642\|ref\|YP_151717.1\| signal recognition particle protein [Salmonella enterica subsp. enteric... gi\|197363569, gi... - gi\|197363569\|ref\|YP_002143206.1\| signal recognition particle protein [Salmonella enterica subsp. ent...	470.0	[0..1]	[453..1]
gi\|82777969, gi\|... - gi\|82777969\|ref\|YP_404318.1\| signal recognition particle protein [Shigella dysenteriae Sd197], gi\|81...	470.0	[0..1]	[452..1]
gi\|49612808, gi\|... - gi\|50122282\|ref\|YP_051449.1\| signal recognition particle protein [Pectobacterium atrosepticum SCRI10...	468.0	[0..1]	[453..1]
gi\|84779043, gi\|... - gi\|85058523\|ref\|YP_454225.1\| signal recognition particle protein [Sodalis glossinidius str. 'morsita...	468.0	[0..1]	[453..1]
gi\|127511995, gi... - gi\|78368887\|ref\|ZP_00839083.1\| Signal recognition particle protein [Shewanella sp. PV-4], gi\|7835906...	467.0	[0..1]	[453..1]
gi\|77976453, gi\|... - gi\|77976453\|ref\|ZP_00831941.1\| COG0541: Signal recognition particle GTPase [Yersinia intermedia ATCC...	466.0	[0..1]	[453..1]

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Predicted Domain #1

Region A:
Residues: [1-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDNLTDRLS RTLRNISGRG RLTEDNVKDT LREVRMALLE ADVALPVVRE FINRVKEKAV  60
   61 GHEVNKSLTP GQEFVKIVRN ELVAAMGEEN QTLNLAAQPP AVVLMAGLQG AGKTTSVGKL 120
  121 GKFLREKHKK KVLVVSADVY RPAAIKQLET LAEQVGVDFF PSDVGQKPVD IVNAALKEAK 180
  181 LKFYDVLLVD TAGRLHVDEA MMDEIKQVHA SINPVETLFV VDAMTGQDAA NTAKAFNEAL 240
  241 PLTGVVLTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTE ALEPFHPDRI ASRILGMGDV 300
  301 LSLIEDIESK VDRAQAEKLA SKLKKGDGFD LNDFLEQLRQ MKNMGGMASL MGKLPGMGQI 360
  361 PDNVKSQMDD KVLVRMEAII NSMTMKERAK PEIIKGSRKR RIAAGCGMQV QDVNRLLKQF 420
  421 DDMQRMMKKM KKGGMAKMMR SMKGMMPPGF PGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	2j289
Description:	No description for 2j289 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits