YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|73856257, gi\|...
Organism:	Shigella sonnei Ss046
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|73856257, gi|....

Description	E-value	Query Range	Subject Range
gi\|81241815, gi\|... - gi\|82777667\|ref\|YP_404016.1\| putative transport/receptor protein [Shigella dysenteriae Sd197], gi\|81...	213.0	[0..1]	[222..1]
gi\|81246151, gi\|... - gi\|82544740\|ref\|YP_408687.1\| putative transport/receptor protein [Shigella boydii Sb227], gi\|8124615...	212.0	[0..1]	[222..1]
gi\|209765322, gi... - gi\|25338016\|pir\|\|B85866 probable transport/receptor protein ECs3146 [imported] - Escherichia coli (s... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7 str. Sakai... gi\|12516605, gi\|... - gi\|15802808\|ref\|NP_288835.1\| hypothetical protein Z3517 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7]	210.0	[0..1]	[222..1]
gi\|30041945, gi\|... - gi\|30063690\|ref\|NP_837861.1\| hypothetical protein S2471 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|24052693, gi\|... - gi\|24113634\|ref\|NP_708144.1\| hypothetical protein SF2337 [Shigella flexneri 2a str. 301], gi\|2405269...	209.0	[0..1]	[222..1]
gi\|218365944, gi... - gi\|218559175\|ref\|YP_002392088.1\| hypothetical protein ECS88_2409 [Escherichia coli S88], gi\|21836594... gi\|91073127, gi\|... - gi\|91211553\|ref\|YP_541539.1\| hypothetical protein UTI89_C2541 [Escherichia coli UTI89], gi\|91073127\|... gi\|117624451, gi... - gi\|117624451\|ref\|YP_853364.1\| hypothetical protein APECO1_4303 [Escherichia coli APEC O1], gi\|115513...	204.0	[0..1]	[222..1]
gi\|26109052, gi\|... - gi\|26248647\|ref\|NP_754687.1\| hypothetical protein c2801 [Escherichia coli CFT073], gi\|26109052\|gb\|AA...	199.0	[0..1]	[222..1]
gi\|22125816, gi\|... - gi\|22125816\|ref\|NP_669239.1\| hypothetical protein y1923 [Yersinia pestis KIM], gi\|21958743\|gb\|AAM854...	102.0	[0..76]	[219..1]
gi\|60468239 - gi\|60468239\|gb\|EAL66249.1\| hypothetical protein DDB0218390 [Dictyostelium discoideum] gi\|60468239, gi\|... - gi\|66811874\|ref\|XP_640116.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468239\|gb\|EAL...	98.0	[0..96]	[218..617]
gi\|77975268 - gi\|77975268\|ref\|ZP_00830804.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	97.0	[0..94]	[219..1]
gi\|78518557, gi\|... - gi\|78693002\|ref\|ZP_00857516.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851855...	96.0	[0..88]	[218..33]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETGNLLCG DKQTAQTYRA VAGTGAGLSW SCHGALAAGL AERTGRHCLP DVKSEFCLGD  60
   61 AGCSKTVART GIAASLVWGG VHYWRHC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPREYGVMGL MWGLFSVIIA SVAQLSLGFA ASHLPPMTHL WDFIAALLAF GLDARILLLG  60
   61 LLGYLLSVFC WYKTLHKLAL SKAYALLSMS YVLVWIASMV LPGWEGTFSL KALLGVACIM 120
  121 SGLMLIFLPT TKQRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits