YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75179196, gi\|...
Organism:	Shigella boydii CDC 3083-94
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75179196, gi|....

Description	E-value	Query Range	Subject Range
gi\|77959383, gi\|... - gi\|77959383\|ref\|ZP_00823403.1\| hypothetical protein YberA_01000345 [Yersinia bercovieri ATCC 43970],...	150.0	[0..1]	[92..1]
gi\|77963721 - gi\|77963721\|ref\|ZP_00827529.1\| hypothetical protein YmolA_01000135 [Yersinia mollaretii ATCC 43969]	149.0	[0..1]	[92..1]
gi\|167424745, gi... - gi\|167424745\|ref\|ZP_02316498.1\| putative membrane protein [Yersinia pestis biovar Mediaevalis str. K... gi\|229897422, gi... - gi\|229897422\|ref\|ZP_04512578.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. PE... gi\|167470767 - gi\|167470767\|ref\|ZP_02335471.1\| hypothetical protein YpesF_23517 [Yersinia pestis FV-1] gi\|229894722, gi... - gi\|229894722\|ref\|ZP_04509902.1\| putative membrane protein [Yersinia pestis Pestoides A], gi\|22970219... gi\|170024416, gi... - gi\|170024416\|ref\|YP_001720921.1\| hypothetical protein YPK_2185 [Yersinia pseudotuberculosis YPIII], ... gi\|162420248, gi... - gi\|77635373\|ref\|ZP_00797458.1\| COG1584: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|186895368, gi... - gi\|186895368\|ref\|YP_001872480.1\| hypothetical protein YPTS_2057 [Yersinia pseudotuberculosis PB1/+],... gi\|77629084, gi\|... - gi\|77629084\|ref\|ZP_00791670.1\| COG1584: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... Q66AY0\|Q66AY0_YERPS - Putative membrane protein precursor - Yersinia pseudotuberculosis gi\|165926402, gi... - gi\|165926402\|ref\|ZP_02222234.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. F1... gi\|166009252, gi... - gi\|166009252\|ref\|ZP_02230150.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. E1979... gi\|166210794, gi... - gi\|166210794\|ref\|ZP_02236829.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. B4200... gi\|167401388, gi... - gi\|167401388\|ref\|ZP_02306885.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. UG05-... gi\|166961773, gi... - gi\|167420078\|ref\|ZP_02311831.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. MG... gi\|108779304, gi... - gi\|108807391\|ref\|YP_651307.1\| hypothetical protein YPA_1395 [Yersinia pestis Antiqua], gi\|108779304\|... gi\|229680830, gi... - gi\|229901934\|ref\|ZP_04517055.1\| putative membrane protein [Yersinia pestis Nepal516], gi\|229680830\|g... gi\|145598402, gi... - gi\|145598402\|ref\|YP_001162478.1\| hypothetical protein YPDSF_1107 [Yersinia pestis Pestoides F], gi\|1... gi\|165938896, gi... - gi\|89104283\|ref\|ZP_01176830.1\| COG1584: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|149366056, gi... - gi\|149366056\|ref\|ZP_01888091.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149292469\|... gi\|16122255, gi\|... - gi\|218929123\|ref\|YP_002346998.1\| hypothetical protein YPO2012 [Yersinia pestis CO92], gi\|16122255\|re... gi\|51589608, gi\|... - gi\|51596326\|ref\|YP_070517.1\| hypothetical protein YPTB2000 [Yersinia pseudotuberculosis IP 32953], g... gi\|25510557 - pir\|\|AF0245 probable membrane protein YPO2012 [imported] - Yersinia pestis (strain CO92) gi\|45436526, gi\|... - gi\|45441664\|ref\|NP_993203.1\| hypothetical protein YP_1860 [Yersinia pestis biovar Microtus str. 9100... gi\|21959146, gi\|... - gi\|22126181\|ref\|NP_669604.1\| hypothetical protein y2296 [Yersinia pestis KIM], gi\|21959146\|gb\|AAM858... gi\|229898065, gi... - gi\|229898065\|ref\|ZP_04513216.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. In...	149.0	[0..1]	[92..1]
gi\|77973493 - gi\|77973493\|ref\|ZP_00829040.1\| hypothetical protein YfreA_01002643 [Yersinia frederiksenii ATCC 3364...	149.0	[0..1]	[92..27]
gi\|77979782, gi\|... - gi\|77979782\|ref\|ZP_00835198.1\| hypothetical protein YintA_01000277 [Yersinia intermedia ATCC 29909],...	148.0	[0..1]	[92..1]
gi\|50121112, gi\|... - gi\|50121112\|ref\|YP_050279.1\| hypothetical protein ECA2185 [Pectobacterium atrosepticum SCRI1043], gi...	142.0	[0..1]	[88..1]
gi\|24112604, gi\|... - gi\|24112604\|ref\|NP_707114.1\| hypothetical protein SF1208 [Shigella flexneri 2a str. 301], gi\|2405150... gi\|30062729, gi\|... - gi\|30062729\|ref\|NP_836900.1\| hypothetical protein S1292 [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|110805210, gi... - gi\|110805210\|ref\|YP_688730.1\| hypothetical protein SFV_1219 [Shigella flexneri 5 str. 8401], gi\|1106...	141.0	[0..1]	[92..1]
gi\|81240693, gi\|... - gi\|82776545\|ref\|YP_402894.1\| hypothetical protein SDY_1254 [Shigella dysenteriae Sd197], gi\|81240693...	140.0	[0..1]	[92..1]
gi\|56127554, gi\|... - gi\|56413297\|ref\|YP_150372.1\| hypothetical protein SPA1091 [Salmonella enterica subsp. enterica serov... gi\|197093699, gi... - gi\|197362222\|ref\|YP_002141859.1\| hypothetical protein SSPA1018 [Salmonella enterica subsp. enterica ... gi\|205342714, gi... - gi\|205342714\|gb\|EDZ29478.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	139.0	[0..1]	[92..1]
gi\|224468256, gi... - gi\|224583729\|ref\|YP_002637527.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205272331, gi... - gi\|205352550\|ref\|YP_002226351.1\| hypothetical protein SG1335 [Salmonella enterica subsp. enterica se... gi\|207856711, gi... - gi\|207856711\|ref\|YP_002243362.1\| hypothetical protein SEN1257 [Salmonella enterica subsp. enterica s... gi\|200390000, gi... - gi\|200390000\|ref\|ZP_03216611.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204927927, gi... - gi\|204927927\|ref\|ZP_03219128.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197264010, gi... - gi\|197264010\|ref\|ZP_03164084.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198243950, gi... - gi\|198243950\|ref\|YP_002215361.1\| hypothetical protein SeD_A1539 [Salmonella enterica subsp. enterica... gi\|194710091, gi... - gi\|194734589\|ref\|YP_002114814.1\| hypothetical protein SeSA_A1921 [Salmonella enterica subsp. enteric... gi\|197212866, gi... - gi\|197249163\|ref\|YP_002146245.1\| hypothetical protein SeAg_B1355 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=ychH] [protein=hypothetical protein] [protein_id=YP_005237714.1] [location=complement(1891252.... gi\|194409301, gi... - gi\|194450997\|ref\|YP_002045827.1\| hypothetical protein SeHA_C1979 [Salmonella enterica subsp. enteric... gi\|194455343, gi... - gi\|194468979\|ref\|ZP_03074963.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|195634415, gi... - gi\|195634415\|gb\|EDX52767.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194444097, gi... - gi\|194444097\|ref\|YP_002041034.1\| hypothetical protein SNSL254_A1915 [Salmonella enterica subsp. ente... gi\|168241368, gi... - gi\|205339409\|gb\|EDZ26173.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205350826, gi... - gi\|205350826\|gb\|EDZ37457.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205332120, gi... - gi\|205332120\|gb\|EDZ18884.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289188, gi... - gi\|197289188\|gb\|EDY28555.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16765123, gi\|... - gi\|16765123\|ref\|NP_460738.1\| hypothetical protein STM1782 [Salmonella typhimurium LT2], gi\|16420312\|... gi\|167553612, gi... - gi\|205322001\|gb\|EDZ09840.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167993229, gi... - gi\|205328680\|gb\|EDZ15444.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161363083, gi... - gi\|161613719\|ref\|YP_001587684.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|238913683 - gi\|238913683\|ref\|ZP_04657520.1\| hypothetical protein SentesTe_21478 [Salmonella enterica subsp. ente... gi\|62127979, gi\|... - gi\|62180346\|ref\|YP_216763.1\| hypothetical protein SC1776 [Salmonella enterica subsp. enterica serova...	138.0	[0..1]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKNASLLG NVLMGLGLVV MVVGVGYSIL NQLPQFNMPQ YFAHGAVLSI FVGAILWLAG  60
   61 ARVGGHEQVC DRYWWVRHYD KRCRRSDNRR HS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits