YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194436470, gi...
Organism:	Escherichia coli 101-1
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194436470, gi....

Description	E-value	Query Range	Subject Range
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	717.0	[0..1]	[462..1]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	716.0	[0..1]	[462..1]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	716.0	[0..1]	[462..1]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	715.0	[0..1]	[462..1]
gi\|37526084, gi\|... - gi\|37526084\|ref\|NP_929428.1\| pyridine nucleotide transhydrogenase [Photorhabdus luminescens subsp. l...	708.0	[0..1]	[462..1]
gi\|29141853, gi\|... - gi\|29141853\|ref\|NP_805195.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|56127812, gi\|... - gi\|56413555\|ref\|YP_150630.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16760383 - gi\|16760383\|ref\|NP_456000.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16502678, gi\|... - gi\|25284880\|pir\|\|AI0682 NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1) - Salmonella enterica subs... gi\|16419999, gi\|... - gi\|16764825\|ref\|NP_460440.1\| pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2], gi\|1... gi\|238911712 - gi\|238911712\|ref\|ZP_04655549.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|168229859, gi... - gi\|205335518\|gb\|EDZ22282.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205327685, gi... - gi\|205327685\|gb\|EDZ14449.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|167551545, gi... - gi\|205323549\|gb\|EDZ11388.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|161614096, gi... - gi\|161614096\|ref\|YP_001588061.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|195634188, gi... - gi\|195634188\|gb\|EDX52540.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168260356, gi... - gi\|205350940\|gb\|EDZ37571.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205339540, gi... - gi\|205339540\|gb\|EDZ26304.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168235559, gi... - gi\|197291149\|gb\|EDY30502.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=pntB] [protein=pyridine nucleotide transhydrogenase] [protein_id=YP_005237357.1] [location=156... gi\|161503424, gi... - gi\|161503424\|ref\|YP_001570536.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ar... gi\|213609351 - gi\|213609351\|ref\|ZP_03369177.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|213424137 - gi\|213424137\|ref\|ZP_03357019.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|205352810, gi... - gi\|205352810\|ref\|YP_002226611.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|204927632, gi... - gi\|204927632\|ref\|ZP_03218833.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|224468540, gi... - gi\|224584013\|ref\|YP_002637811.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|213999332 - gi\|213999332\|ref\|ZP_03410067.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|194457033, gi... - gi\|194470669\|ref\|ZP_03076653.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|194408065, gi... - gi\|194449761\|ref\|YP_002045516.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|194444194, gi... - gi\|194444194\|ref\|YP_002040727.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|205343863, gi... - gi\|205343863\|gb\|EDZ30627.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|199602297, gi... - gi\|200389852\|ref\|ZP_03216463.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197241783, gi... - gi\|197263528\|ref\|ZP_03163602.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197251418, gi... - gi\|197251418\|ref\|YP_002146565.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|194710685, gi... - gi\|194735183\|ref\|YP_002114494.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e...	707.0	[0..1]	[462..1]
gi\|62127701, gi\|... - gi\|62180068\|ref\|YP_216485.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri...	706.0	[0..1]	[462..1]
gi\|102621429 - gi\|102621429\|gb\|ABF71059.1\| NADP transhydrogenase beta subunit [Enterobacter cloacae]	706.0	[0..1]	[462..1]
gi\|162418619, gi... - gi\|77636206\|ref\|ZP_00798282.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis Ango... gi\|25284883 - pir\|\|AG0280 NAD(P) transhydrogenase (AB-specific) (EC 1.6.1.2) - Yersinia pestis (strain CO92) gi\|45436745, gi\|... - gi\|45441882\|ref\|NP_993421.1\| pyridine nucleotide transhydrogenase [Yersinia pestis biovar Microtus s... gi\|22126022, gi\|... - gi\|22126022\|ref\|NP_669445.1\| pyridine nucleotide transhydrogenase [Yersinia pestis KIM], gi\|21958971... gi\|218929394, gi... - gi\|218929394\|ref\|YP_002347269.1\| pyridine nucleotide transhydrogenase [Yersinia pestis CO92], gi\|161... gi\|51596548, gi\|... - gi\|51596548\|ref\|YP_070739.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis IP 32... gi\|229688671, gi... - gi\|229898381\|ref\|ZP_04513528.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229894980, gi... - gi\|229894980\|ref\|ZP_04510158.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229837820, gi... - gi\|229837820\|ref\|ZP_04457979.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|152958614, gi... - gi\|77629298\|ref\|ZP_00791884.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pseudotuber... gi\|149292198, gi... - gi\|149365785\|ref\|ZP_01887820.1\| NAD(P) transhydrogenase subunit beta [Yersinia pestis CA88-4125], gi... gi\|145209839, gi... - gi\|145598143\|ref\|YP_001162219.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Pestoides F],... Q66AA8\|Q66AA8_YERPS - NAD(P) transhydrogenase subunit beta precursor - Yersinia pseudotuberculosis gi\|89104625, gi\|... - gi\|89104625\|ref\|ZP_01177163.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis biov... gi\|108779559, gi... - gi\|108807646\|ref\|YP_651562.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Antiqua], gi\|108... gi\|165920845, gi... - gi\|165927177\|ref\|ZP_02223009.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|108811925, gi... - gi\|229902228\|ref\|ZP_04517349.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|165990317, gi... - gi\|166010615\|ref\|ZP_02231513.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166210796, gi... - gi\|166210796\|ref\|ZP_02236831.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|167400947, gi... - gi\|167400947\|ref\|ZP_02306453.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166958926, gi... - gi\|167422114\|ref\|ZP_02313867.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|167056020, gi... - gi\|167424833\|ref\|ZP_02316586.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Mediae... gi\|167469358 - gi\|167469358\|ref\|ZP_02334062.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis FV-1] gi\|169750713, gi... - gi\|170024179\|ref\|YP_001720684.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis Y... gi\|186895608, gi... - gi\|186895608\|ref\|YP_001872720.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis P...	695.0	[0..1]	[462..1]
gi\|85059465, gi\|... - gi\|85059465\|ref\|YP_455167.1\| pyridine nucleotide transhydrogenase [Sodalis glossinidius str. 'morsit...	693.0	[0..1]	[462..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGLVTAAY IVAAILFIFS LAGLSKHETS RQGNNFGIAG MAIALIATIF GPDTGNVGWI  60
   61 LLAMVIGGAI GIRLAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLHHD AGMAPILVNI 120
  121 HLTEVFLGIF IGAVTFTGSV VAFGKLCGKI SSKPLMLPNR HKMNLAALVV SFLLLIVFVR 180
  181 TDSVGLQVLA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIMTAIALVF GWHLVASIGG ADMPVVVSML NSYSGWAAAA AGFMLSNDLL IVTGALVGSS  60
   61 GAILSYIMCK AMNRSFISVI AGGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [277-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGSSTGDDQ EVGEHREITA EETAELLKNS HSVIITPGYG MAVAQAQYPV AEITEKLRAR  60
   61 GINVRFGIHP VAGRLPGHMN VLLAEAKVPY DIVLEMDEIN DDFADTDTVL VIGANDTVNP 120
  121 AAQDDPKSPI AGMPVLEVWK AQNVIVFKRS MNTGYAGVQN PLFFKENTHM LFGDAKASVD 180
  181 AILKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.522879
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits